GgaINT0131672 @ galGal4
Intron Retention
Gene
ENSGALG00000002558 | ASL1
Description
Delta-1 crystallin [Source:UniProtKB/Swiss-Prot;Acc:P02521]
Coordinates
chr19:4949247-4949772:-
Coord C1 exon
chr19:4949675-4949772
Coord A exon
chr19:4949325-4949674
Coord C2 exon
chr19:4949247-4949324
Length
350 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
TTCTCTCCTTTCTCATGCAGAGA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTTGTGACTGATCTGAAACTGCTCCTGAAGAGTTCCATCTCTGTCATCTCCACTCACCTGCTGCAGCTCATCAAGACCCTGGTGGAGCGCGCTGCTAT
Seq A exon
GTAAGTCCTTTCCCATGTCTATGGTCTCAGCCTTCTTGGGACAGGAGACTTCTAGACTTGCTCTTTGACTGATAACAATCACGGCAACAGCAAGGTCTTCTGCAGAGGATGTTACAGTCAGGCACTGTGTGATAGCACAGGGAATAGCCGCTCTTTCTCCACAGCCCACATCAGAGAGACATTCCTCTTTCCTCATTGTGTCCTGGGGACATAAGGGGAGGAAGGCAAAGACCAAGTGCAGCACAACACAGGCTAAAGATATTCTCCTCATGACCTTGCCAGAAAACCCGAGAGTGTACCTGTCACTGCTCTCTGTACTGACAGCTGTCTTTCTCTCCTTTCTCATGCAG
Seq C2 exon
AGAAATTGATATTATCATGCCTGGCTACACCCACCTGCAGAAAGCTCTGCCCATCAGATGGAGCCAGTTCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558:ENSGALT00000039936:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]