GgaINT0131672 @ galGal3
Intron Retention
Gene
ENSGALG00000002558 | ARLY1_CHICK
Description
NA
Coordinates
chr19:4916008-4916533:-
Coord C1 exon
chr19:4916436-4916533
Coord A exon
chr19:4916086-4916435
Coord C2 exon
chr19:4916008-4916085
Length
350 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGT
5' ss Score
6.69
3' ss Seq
TTCTCTCCTTTCTCATGCAGAGA
3' ss Score
10.14
Exon sequences
Seq C1 exon
GTTGTGACTGATCTGAAACTGCTCCTGAAGAGTTCCATCTCTGTCATCTCCACTCACCTGCTGCAGCTCATCAAGACCCTGGTGGAGCGCGCTGCTAT
Seq A exon
GTAAGTCCTTTCCCATGTCTATGGTCTCAGCCTTCTTGGGACAGGAGACTTCTAGACTTGCTCTTTGACTGATAACAATCACGGCAACAGCAAGGTCTTCTGCAGAGGATGTTACAGTCAGGCACTGTGTGATAGCACAGGGAATAGCCGCTCTTTCTCCACAGCCCACATCAGAGAGACATTCCTCTTTCCTCATTGTGTCCTGGGGACATAAGGGGAGGAAGGCAAAGACCAAGTGCAGCACAACACAGGCTAAAGATATTCTCCTCATGACCTTGCCAGAAAACCCGAGAGTGTACCTGTCACTGCTCTCTGTACTGACAGCTGTCTTTCTCTCCTTTCTCATGCAG
Seq C2 exon
AGAAATTGATATTATCATGCCTGGCTACACCCACCTGCAGAAAGCTCTGCCCATCAGATGGAGCCAGTTCCTGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002558:ENSGALT00000039936:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100),PF0270212=KdpD=FE(25.6=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(8.8=100),PF0270212=KdpD=PD(4.0=18.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]