RnoINT0021927 @ rn6
Intron Retention
Gene
ENSRNOG00000000903 | Asl
Description
argininosuccinate lyase [Source:RGD Symbol;Acc:619974]
Coordinates
chr12:30171330-30173677:+
Coord C1 exon
chr12:30171330-30171427
Coord A exon
chr12:30171428-30173599
Coord C2 exon
chr12:30173600-30173677
Length
2172 bp
Sequences
Splice sites
5' ss Seq
GGCGTAAGT
5' ss Score
9.39
3' ss Seq
TGTTCCTTCCCCTACCACAGGGA
3' ss Score
9.17
Exon sequences
Seq C1 exon
GTGGTCACGGACCTCAGGCTGTGGATGAGGCAAACCTGCTCAAAACTCTCCACCTTCCTCAAGGTGCTCATTGAAGCCATGGTAGACCGGGCAGAGGC
Seq A exon
GTAAGTCTCCTGTGGATACCGTCACAGGAATTTTCTCCTTGGAGGGGAGCTAAGCAAGGAGTCGAGTGTGGGTAACCCTAAACCAGCTATGCCAGAAGGTCTGCACACAGCATGGGTGATGGTTCCCCTAGGGCTGCAGAATAGATAGGGGCCTGATCTTCCCTCGTCTTCCCTGGTCTGTATACTCTAGCTCCTCCTGGGACCAGAGGTGAGTCCATGTCCAACTAGGGCAGAATTGCATATGAGTGGCTGGAAGGAAGAAAATAATACCCAAGTGAAGGTCCACATTTCCCACACCCTCCTAAAGGAAGAGAATGTCAATATTCCACAGGCCCAGTTGGGTTTGGGTTTTTGTTTTTCAGGGTATTTGTTTATTTTATATGTATAAGTGTTTTGTCTACATAGATGTATGTGTGTTACCTGCATGCCTGGTGCCGGTGGAGGTTAGAAGAGGGCATCAGATCCCCTTTTCACTCAAGCTGTGAATAGCCATGAGCCACCATGCGGGGTCTGGGAATCAAATCCCAAGTCTTCCTGCAAGACCAAGTGGTCTTTTTTTTTTCTTTCTTTCTTCCTTTCTTTCTTTCTTTTTTTTTTTTTTTTTTTTTTCAAGATTTACTTTATTTGAGTACTGTAGCTCTCTTTAGATGTTACCAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCCAAGACCAAGTGGTCTTAACCAATAAGCTGTCCTTCCAGTCCCACAGGCCCAACTGTGCCAGGCTCAACTCTTCTCATAAACATGGCAGCAGTTTGGTTCAGAGGATAGAGTCTTACAGCAGACACCTGGAGTCCCAGAGGGCCACCAGGCTCTGTTCTCCTCTGAATGTAAGACCTAGATGGCATGGGTGAGGAGAATTGAACATGAGGCCCTGAGGTATATTAGATGGGCTCAGAGCTCCCAGGACAATAAGGAGCGGGGTGTGATTTACCAGCTCCATCCCCTACCTAGGGTGACCCAAAGGCCACCAGATGGCAGCCAGTGACTGTTTAAGGATTTTTGGAGACTGAAGCTCCAGGTGCCCAAGGAAAGGGCCTGACTGAGCCCAAAGCAGGCAGACACTCTTCCATCCAGACTGTCCCCTCTCACTTCACACCCCACCCTACACGGAAGGCAAATGACAGAGCCAAAGGCTGCCTCCTTCCAGCCCCATCCCATGCATCCACGTTCTAATGTCCCTGGGACTGGCTGTGTCCCCCCTTCAGACTTGACAAAGGAGACCCTGAAATATCTTAGGTGGCATCAGAATCAGGGACGGCGTCTCCCCTTTCCTAACTTTGTGTACCCTGTTCATAGACCTCAGCTAAGTGTGAATACAAAGGGATGTGACCTGAGGTAGGCGTGGGCTGCTGGGAAGAATAGGGATGTGAGGGTTAGTGAATACAGGAAATCAAAATAGTTTTGGTTAGACACTAAGGGTAGCCTGGGGCTTGCTATGTAACCCAGGCTAGCCTCAGATGTCCTTTCTTCCTCTTTCTCACTTTCCTGTCCTGTCCTTTTTTTTTTTTTCTTTTTTTTTCTTTTTTTTTCTTTTTTTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCTAGGCAAGCGCTCTACCGCTGAGCTAAATCCCCAACCTTTTTTTTTTTTTTTTAAAGACAGCCCAAGCTGGCTCCAAATCCTATGTAACCGAAGTTGACCTTGAACTCCTGGTTCTCCTGCTTTAGCCTCCCAATCGCTAGGATTACAGGTGTCTACCACCACACCAGGGTCTCCTCTGTAACCCAGACTGGCATCGAACTCACCATATAGCCAAGGCTGGTCTCAATCTTATGGCCATCCTCCTGCCTCAAACTCCCCCGCACTGGGACCACAGACTCGCATCATCATGCCCTCCCTGGTTTAGTCTTTGAACTCACTGACTCACTTTCGGGTTTTATCCCATGGTGAGCATCTGATCCCTTTTTTAGGCGGAGAACCACAGGTCTATTCTTACCTTCCCTGAAAAGAGCCTGCCCTGTAGGGGTTCCAGGGGTCCTAAGCTAGTCCTGTTCCTTCCCCTACCACAG
Seq C2 exon
GGAGTGTGAAGTCCTCTTCCCTGGGTACACACACTTGCAGAGAGCTCAGCCCATCCGCTGGAGCCACTGGATCCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000903:ENSRNOT00000001211:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0020615=Lyase_1=FE(10.8=100)
A:
NA
C2:
PF0020615=Lyase_1=FE(8.8=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]