GgaINT0132886 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:16577-16947:+
Coord C1 exon
chr19:16577-16742
Coord A exon
chr19:16743-16822
Coord C2 exon
chr19:16823-16947
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATGTATTCTCATCCATGCAGAGG
3' ss Score
7.66
Exon sequences
Seq C1 exon
ATCTTGTCAGAATGGAAACAGAAGTTCGAGGAGTCGCAAACAGAGCTGGAGGCATCACAGAAGGAGGCTAGGTCCCTCAGCACTGAGCTCTTCAAGCTGAAGAATGCCTATGAGGAATCACTGGAGCACCTGGAGACCTTCAAGAGGGAGAATAAGAACCTCCAAG
Seq A exon
GTGAGAACATGGCCTCCACCTGGCCACTCCAATGTCATCCATCTATTTCTACATGATCTGATGTATTCTCATCCATGCAG
Seq C2 exon
AGGAGATCTTGGACCTCACAGAGCAGCTCGGAGCCAGCCAAAAATCCATCCATGAGCTGGAGAAGGTCCGGAAGCAACTGGATGCGGAGAAGCTGGAGCTGCAAGCAGCACTGGAGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(24.6=100),PF078897=DUF1664=PD(0.1=0.0),PF045827=Reo_sigmaC=FE(39.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(18.3=100),PF045827=Reo_sigmaC=PD(24.5=81.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGAGGCATCACAGAA
R:
TGGATGGATTTTTGGCTGGCT
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]