MmuINT0103552 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55566918-55567294:-
Coord C1 exon
chr14:55567129-55567294
Coord A exon
chr14:55567043-55567128
Coord C2 exon
chr14:55566918-55567042
Length
86 bp
Sequences
Splice sites
5' ss Seq
AGGGTGGGC
5' ss Score
4.44
3' ss Seq
TCTGGTCCTCTGATCCTCAGAGG
3' ss Score
6.66
Exon sequences
Seq C1 exon
ATCCTGGCTGAGTGGAAGCAGAAGTATGAGGAGTCGCAGTCAGAGCTGGAGTCTTCCCAGAAGGAGGCGCGCTCCCTGAGCACAGAGCTCTTCAAGCTCAAGAACGCCTATGAGGAGTCTCTGGAGCACCTGGAGACCTTCAAGCGGGAGAACAAGAACCTCCAGG
Seq A exon
GTGGGCGAGCTGGGGGACAGGGAAGAGCCTCAGGGAAAGGGAAGTGGGGCAAGGCATATTGATCTTTCTGGTCCTCTGATCCTCAG
Seq C2 exon
AGGAGATCTCAGACCTGACTGAACAGCTGGGAGAAGGGGGGAAAAACGTGCACGAGCTGGAGAAGATCCGCAAACAGCTGGAGGTGGAGAAGCTGGAGCTGCAGTCAGCCCTGGAGGAGGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.429 A=NA C2=0.548
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF045827=Reo_sigmaC=FE(38.5=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF045827=Reo_sigmaC=PD(26.6=90.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCAGAGCTGGAGTCTTCCC
R:
CCCTTCTCCCAGCTGTTCAGT
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: