GgaINT0132886 @ galGal4
Intron Retention
Gene
ENSGALG00000013781 | MYH7
Description
Gallus gallus myosin, heavy chain 7, cardiac muscle, beta (MYH7), mRNA. [Source:RefSeq mRNA;Acc:NM_001001302]
Coordinates
chr19:21978-22348:+
Coord C1 exon
chr19:21978-22143
Coord A exon
chr19:22144-22223
Coord C2 exon
chr19:22224-22348
Length
80 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
3' ss Seq
ATGTATTCTCATCCATGCAGAGG
3' ss Score
7.66
Exon sequences
Seq C1 exon
ATCTTGTCAGAATGGAAACAGAAGTTCGAGGAGTCGCAAACAGAGCTGGAGGCATCACAGAAGGAGGCTAGGTCCCTCAGCACTGAGCTCTTCAAGCTGAAGAATGCCTATGAGGAATCACTGGAGCACCTGGAGACCTTCAAGAGGGAGAATAAGAACCTCCAAG
Seq A exon
GTGAGAACATGGCCTCCACCTGGCCACTCCAATGTCATCCATCTATTTCTACATGATCTGATGTATTCTCATCCATGCAG
Seq C2 exon
AGGAGATCTTGGACCTCACAGAGCAGCTCGGAGCCAGCCAAAAATCCATCCATGAGCTGGAGAAGGTCCGGAAGCAACTGGATGCGGAGAAGCTGGAGCTGCAAGCAGCACTGGAGGAGGCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000022380:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.214
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(6.4=100),PF0003816=Filament=FE(18.2=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(4.8=100),PF0003816=Filament=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGCTGGAGGCATCACAGAA
R:
TGGATGGATTTTTGGCTGGCT
Band lengths:
177-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]