GgaINT0132891 @ galGal3
Intron Retention
Gene
ENSGALG00000013781 | Q90WH5_CHICK
Description
NA
Coordinates
chr19:18651-19493:+
Coord C1 exon
chr19:18651-18926
Coord A exon
chr19:18927-19397
Coord C2 exon
chr19:19398-19493
Length
471 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AGTGTTCCTCCTCCCCCCAGACA
3' ss Score
10.54
Exon sequences
Seq C1 exon
GCGGCCATGATGGCAGAAGAGCTGAAGAAGGAGCAGGACACAAGTGCCCACCTAGAGCGGATGAAGAAGAACATGGAGCAGACTGTCAAGGACCTCCAGCTGAGGCTGGATGAGGCTGAGCAGCTGGCCCTCAAGGGAGGCAAGAAGCAGCTGCAGAAGTTGGAAGTTCGGGTGCGGGAGCTGGAGAATGAGCTGGAGGCTGAGCAGAAGCGCAATGCTGAGAGCATCAAGGGACTCCGCAAGTCAGAGCGGCGTGTCAAGGAGCTCAGCTACCAG
Seq A exon
GTGGGACATCATAGCAGAGCTGGTGGCCATAAAGGCATGGATGACCTGGAACGTCACCCACTCTATGTTCACATAGATGCTGCATGACCTGGAATGTGGTTGACCTACTGGCTTTAGGGAATTGCATGCCCTACAGTATGGTTGACCTGGTAGCAATGGGGACGAGTGATCTAGGACATGGTTGACCTGTTAGCTGTAGGGAAAGGGATGACCTAAAGCATAGACATTCTGATCACATGGACATGGGTGACCTAGAACATCGTGGCCAGTGGACACTGATGACCATGGCCATCTAATGGCTCTATGTCCAATGACCTACAAGCTTGTAGGGAGGACACATCCCTTCCAAGAACACCTCTAAATAATCTCCACTTCTAATTGCCACCACGGTTACCTAAAGCATGGAGATCTATGAGGGGCTGTGGGGCCTGGACCAACCATCTCCCACCTTAGTGTTCCTCCTCCCCCCAG
Seq C2 exon
ACAGAGGAAGACCGGAAGAACATGGTGAGGCTACAGGACTTGGTGGACAAGCTGCAGCTGAAGGTGAAGGCCTATAAGAGGCAGGCAGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013781:ENSGALT00000040718:36
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.641 A=NA C2=0.312
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGAAGAAGGAGCAGGACAC
R:
CCTCCTCTGCCTGCCTCTTAT
Band lengths:
350-821
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]