MmuINT0103557 @ mm9
Intron Retention
Gene
ENSMUSG00000040752 | Myh6
Description
myosin, heavy polypeptide 6, cardiac muscle, alpha [Source:MGI Symbol;Acc:MGI:97255]
Coordinates
chr14:55561985-55563390:-
Coord C1 exon
chr14:55563115-55563390
Coord A exon
chr14:55562081-55563114
Coord C2 exon
chr14:55561985-55562080
Length
1034 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
TCCCTCCCACCCACCTTCAGACA
3' ss Score
8.74
Exon sequences
Seq C1 exon
GCCGCAATGATGGCTGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGCATGAAGAAGAACATGGAGCAGACCATCAAGGACTTGCAGCACCGTCTGGACGAGGCAGAGCAGATCGCCCTCAAGGGCGGCAAGAAGCAGCTGCAGAAGCTGGAGGCCCGGGTCCGGGAGCTGGAGAATGAGCTGGAGGCTGAGCAGAAGCGCAATGCAGAGTCGGTGAAGGGCATGAGGAAGAGCGAGCGGCGCATCAAGGAGCTCACCTACCAG
Seq A exon
GTTGGGCAGGGCTGATCAGGATGGAGCAATGGCTTTACAAGCCCACCTGTGGGCGCAAACAGGGCTCTGGTGTGCTGTGCCATCACTCACTAATGCCAGGCACCACTTCACACCAGTACCTTTCGATGCTAGCTGCAGTTTCTCTGATGGGACACCTAGGCCTTAGGGCACCATCACAGAGTGTCTGAGAATGCCATCTGTATAGTGGAGATTGGCTATTTTCAGTGTCTGGGAGGAGAAGCCTAAGGGGATTGGTGCATTGGTCCACCTAAGAGGGTGTACAAGAGGCACATGGTAGAGATTGCAGATCTATTGTGGACTAAGGGGCAATGGTATCTTAGAACATTAAATGACATGGAGACAGGAATGACCAAGGGGCACTGGAGCCACAGACCCTGCTGCCCAAATTCTGGCTCAGGAGAAGGTGCCAGAATATTGGGCTATGTTAGATAGAATAATCTAGATGGTGATAACACCAGCTTTCTGTACTATTCCTCTTATGATCACTTTGAACCACTGGCTGAAATTGCCCACGTTACTGCAAGGGAAACTCTATTTACCAGGCAGACCCTCTGTCTCCATATGACCATAGTAAGAGGTTCCTGGGAGTGGCAGGGAGTTTGAAGAAATGGCTCAGTGATTAAGAGCACTCACGGCTCTTTCAGTGAACCCGGGTTCAATTCCCAGCACCCACATGGCAGCTCACAACTGTCTGTGATCCCAGAGTCAGACACCCTCACACAGACATACATGCAGGCAAAACACCAATGCAAATAAAAATAAACAAATAAATAAATAAATTGAAGTTCCCAGTGGCTCTGAGAACCTCCCCTCATTTCCAGCACCCAGACACTCATTAATTTGTGATTCTCTAACTGAAAAATCCTTTCGTCCTACGACCCCTTGACCTGAGCCACCGGAGGGTGAGGCCTCTGAGGCCTGGCGAGAGGAATAGAGTAAGGGAGGAGGGACTGATAACCACAATTGCTTCTCTCCCCAAAACTGGCTCCTCCATCCCTCCCACCCACCTTCAG
Seq C2 exon
ACAGAGGAAGACAAGAAGAACTTAATGCGGCTGCAGGACCTGGTGGACAAGCTACAGTTGAAGGTGAAGGCCTACAAGCGCCAGGCTGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040752-Myh6:NM_001164171:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.913 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATGGCTGAGGAGCTGAAGA
R:
CGCTTGTAGGCCTTCACCTTC
Band lengths:
349-1383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: