RnoINT0096518 @ rn6
Intron Retention
Gene
ENSRNOG00000025757 | Myh6
Description
myosin heavy chain 6 [Source:RGD Symbol;Acc:62029]
Coordinates
chr15:33606583-33608058:-
Coord C1 exon
chr15:33607783-33608058
Coord A exon
chr15:33606679-33607782
Coord C2 exon
chr15:33606583-33606678
Length
1104 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGG
5' ss Score
5.26
3' ss Seq
TCTCTCCTACCCACCTTCAGACA
3' ss Score
8.79
Exon sequences
Seq C1 exon
GCCGCCATGATGGCCGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGCATGAAGAAGAACATGGAGCAGACCATCAAGGACCTGCAGCACCGGCTGGACGAGGCAGAGCAGATCGCCCTCAAGGGTGGCAAGAAGCAGCTGCAGAAGCTGGAGGCCCGGGTCCGGGAGCTGGAGAATGAGCTGGAGGCTGAGCAGAAGCGCAATGCGGAGTCGGTGAAGGGCATGAGGAAGAGCGAGCGGCGCATCAAGGAGCTCACCTACCAG
Seq A exon
GTTGGGCGGGGCAGATGGGGAAGGAGTGATGGCATTACGAGCCCACCCGTGGGTTCAAACAGGGCTCTGCTGTGCTGTGCTGCGCTGCGCTCGCCAGTGCCAGGCACCACTCCACACCTGCACTTTAGACGCCAGCTGCAGTTCCTCTGACAGGACGCCTAGGCCTTAGGGCATAGTCTCAGCGTCTGAGAATGCCACCTACATAGCTGAGGTTGGCCATTGACCTGCTATTCTCAGTGTCTGCGAAGAGAAGCCTAAGGAGATGGGCGAATTGGTCCACTTAAGAAGGGGATAGAGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGGAAGCACAAGGCCCTGGGTTAGGTCCCCAGCTCCGAAAAAAAGAACCAAAGGAAAAAAAAAAAAAAAGAAGAAGGGGATAGAGGCGTAGGGTAGATATTGCAGACCTATTGTGGACAAAGGCGCAATGGCGTCCTAGAACACGACCCAGAGACAGGAATGACCACAGCCATTGGAGCCACAGACCCTGCTGCCCAAATTCTGGCTCAGGAGAATGTGCCAGAATATTGGGTTATGTTAGTTAGAATAATCTAGGTGGTGATAACACCAGCTTTCTTTGCTATTCCTCTTCTGGTCACTTTGAACCACTGGCTGAAAGGGCCCGTGTTACTGCCAGGGAAACTATTCACCCCTATGTCTCCATATGACCACAGTAAGAGGTTGAAGAAATGACTCAGGGGTTAAAAGCACTCACTGCTTCCCAGCACCCACACGGCAGCTCACAGCTGTAATCCCAAGGTCAGACACCCTCACACAGGTATACAGGCAGGCAAAATGCCAATGCAAATAAAATAGACAGACAAACAAACAAGTAAATTTTTCCTGTGGCTCTGAGAACCTCCCCTCACTTCCAGCACCCGGACACTCGTTAATTTGTAAGTTCCTGACTGAAAAATCCCTTTGGCCTACAAAGAGAGACAGCAACCCCTTGAGGGAGAGGCAGCTGAGGCCTGGGGACAGGAATAGAGTAAGGGAGGAGGGGTTAATGACCACAGTTACTCCTCTCCCCAAAACTGGCTTCTCCCTCCCTCTCTCCTACCCACCTTCAG
Seq C2 exon
ACAGAGGAAGACAAGAAGAACTTGGTGCGGCTGCAGGACCTGGTGGACAAGCTGCAGTTGAAGGTGAAGGCCTACAAGCGCCAGGCTGAAGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025757:ENSRNOT00000023302:35
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.902 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGGAGCTGAAGAAGGAGCA
R:
CGCTTGTAGGCCTTCACCTTC
Band lengths:
342-1446
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]