HsaINT0107827 @ hg19
Intron Retention
Gene
ENSG00000197616 | MYH6
Description
myosin, heavy chain 6, cardiac muscle, alpha [Source:HGNC Symbol;Acc:7576]
Coordinates
chr14:23852434-23853926:-
Coord C1 exon
chr14:23853651-23853926
Coord A exon
chr14:23852530-23853650
Coord C2 exon
chr14:23852434-23852529
Length
1121 bp
Sequences
Splice sites
5' ss Seq
CAGGTGCGG
5' ss Score
9.13
3' ss Seq
TCCCACCCTCCCACCCCCAGACA
3' ss Score
9.74
Exon sequences
Seq C1 exon
GCCGCCATGATGGCAGAGGAGCTGAAGAAGGAGCAGGACACCAGCGCCCACCTGGAGCGCATGAAGAAGAACATGGAGCAGACCATTAAGGACCTGCAGCACCGGCTGGACGAGGCCGAGCAGATCGCCCTCAAGGGAGGCAAGAAGCAGCTGCAGAAGCTGGAAGCGCGGGTGCGGGAGCTGGAGGGTGAGCTGGAGGCCGAGCAGAAGCGCAACGCAGAGTCGGTGAAGGGCATGAGGAAGAGCGAGCGGCGCATCAAGGAGCTCACCTACCAG
Seq A exon
GTGCGGCGGACGCCAGACACCAGGAGTAGATGTGGAAGTTTCTTCTCTGGCCCCACTGCCCCGCCCTCACAGGGCTCCTCTCACCTCCTCCTTGAGATGCTGTTGGTAGATTTAACGTTCTTCTCACGCTCTGCAGTCAGTTTGACTTGAGTCTATGAGTTTTTCCAGCAAATGAAGAATCTACTTCTACTTCCTGAAAACTCTTCTAACTAGTCTTTCCCCAGGTTTCTTTCTTTCTTTTTTTTTTTTTTTAATAACTCTAAGTGCTACCATGAAGACTTCAGAACAGTTCAAAGAATCCTTCCACCTTCGACTGTGGGGATAAGAGTCAGGGGAGGGGAAAAGACCCGGAAATCTTCCATAGAACTTCTGGCACACAAAGAGAAGGCCACAGAGAAAGAGGACCCTAGAATGCTCTAAAACCTCCACTTGCATAGCTGAGAGCTGTGCCCTTGGCCCGTTATTTTCAGTGTACCTGGGAAGAAAAGGCCAAGGAGACGAGGGTGTCAGTCCATTTGATAGATGGATACCAGAGGCACAAGAAAGAGGTTACAGATACAGAACCACAGAGTGATTTGTGGACAGAAGTAGAAATGGCATCCTGGCACATACAATGATAAAGAGATAGGAATGATCGAGTGACGTTGGAGCCAGTGATCCCGATGCCTGAATTCTGGCCCAGTACAATATATTAGAATGTAGAATAATCTGGATTATGATAATACCCCCTTCTTTCTGCATTCTTTTTCTGGTCAAGAACTACTGGCCAAGAGAACCTATGTAAGTCCAGGTTGGAGCTTTATCCACCATACTGGAGCTGGAACAGACCTGGTGCTTTTATATTACCACATTAGGGAATTCCATTAGGTTCTGAGCCCCTCCCCCTACTTCTAGCTTTATGACTTCAGCCTTCATTGCTCTGTGGATCCCTGACTGACAACCTTGCATTGCCCCTTTGACCTACGATAGAGTCAGAGAATCTTCCCCACCACCTCTTTGACCTGGATCATTGCAGGGAGGGGCAGCAAAGGCAAGGGGAGAAGAGTAAAATGATGGAGGAGGGAAAGGTGATTGCATTTGCTCCCCCTCCAAACCAGCTTCTCCCACCCTCCCACCCCCAG
Seq C2 exon
ACAGAGGAAGACAAAAAGAACCTGCTGCGGCTACAGGACCTGGTGGACAAGCTGCAACTGAAGGTCAAGGCCTACAAGCGCCAGGCCGAGGAGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197616-MYH6:NM_002471:36
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.826 A=NA C2=0.219
Domain overlap (PFAM):
C1:
PF0157614=Myosin_tail_1=FE(10.6=100)
A:
NA
C2:
PF0157614=Myosin_tail_1=FE(3.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGGAGCTGAAGAAGGAGCA
R:
CGCTTGTAGGCCTTGACCTTC
Band lengths:
342-1463
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)