GgaINT0133402 @ galGal4
Intron Retention
Gene
ENSGALG00000002041 | AGRN
Description
agrin [Source:RefSeq peptide;Acc:NP_990858]
Coordinates
chr21:2716111-2716544:-
Coord C1 exon
chr21:2716433-2716544
Coord A exon
chr21:2716123-2716432
Coord C2 exon
chr21:2716111-2716122
Length
310 bp
Sequences
Splice sites
5' ss Seq
CCGGTACGT
5' ss Score
10.49
3' ss Seq
CCCTGCTGTCTGGATCCCAGAAA
3' ss Score
6.14
Exon sequences
Seq C1 exon
GAGCAAAGAGCCAGTTCCCCTCAACACCTGGATAAGCGTTTTGTTGGAGAGGAGTGGGCGCAAAGGGGTAATGAGGATCAACAATGGCGAGAGGGTGATGGGAGAGTCACCG
Seq A exon
GTACGTTGACAGGCCAAAACAAGCTGCCCAGAGCTCTCTGGGCTTCCAACCCTGCTCCCCTCCCTGTGTGAAACCAGCTGAGATACCAGACCCATGGGCTTTGATTCCCGGAGGTGCATGGAGGGTGGAGGAGGAGTGGGCGAGACCTGGGAGCTGAGGATGCTGGTGGGACAGCCGCTGCACACTCCTTGCTCTTGCAACCCTGCATGTTGTGATGTTACCCACTGATCTTCCATTTCTCTCTCTCTTTCTCTCTCTCTCCCTTTGATTTGCATTTGTATTTTTCCCTCCCCTGCTGTCTGGATCCCAG
Seq C2 exon
AAATCCCGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041:ENSGALT00000003171:33
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.289 A=NA C2=0.250
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(27.2=100)
A:
NA
C2:
PF0005418=Laminin_G_1=FE(2.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]