RnoINT0015325 @ rn6
Intron Retention
Gene
ENSRNOG00000020205 | Agrn
Description
agrin [Source:RGD Symbol;Acc:2067]
Coordinates
chr5:173594585-173594923:-
Coord C1 exon
chr5:173594912-173594923
Coord A exon
chr5:173594702-173594911
Coord C2 exon
chr5:173594585-173594701
Length
210 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
TTACCCCATGCCTCCTATAGGTT
3' ss Score
9.6
Exon sequences
Seq C1 exon
AAATCCCGCAAG
Seq A exon
GTACTGTTGGCCTCTTACCCAGCTCAACTCACCATCTCTTGTACCCATTCCTAGAGTAGCCCTTTCCCACTAAGACCTAGTCTGCCATTTCTGTGTGATTAATGCCGCCTCCTAGATAGTGAGGGGTGGGTGTGGGGCATCAAGCAGTTGGGCATACTTCAGGCCAGTGGGTGGATCAGACATTGACCCTTTACCCCATGCCTCCTATAG
Seq C2 exon
GTTCCGCACACCATGCTCAACCTCAAGGAGCCTCTCTATATTGGGGGAGCTCCTGACTTCAGCAAGCTGGCCAGGGGGGCTGCAGTGTCCTCTGGCTTCAATGGTGTCATCCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020205:ENSRNOT00000045678:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.250 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0005418=Laminin_G_1=FE(2.2=100)
A:
NA
C2:
PF0005418=Laminin_G_1=FE(27.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]