GgaINT1030943 @ galGal4
Intron Retention
Gene
NA
Description
NA
Coordinates
chr21:2715528-2716122:-
Coord C1 exon
chr21:2716111-2716122
Coord A exon
chr21:2715645-2716110
Coord C2 exon
chr21:2715528-2715644
Length
466 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CCATCTCCCCTCCTTGCCAGGTG
3' ss Score
10.1
Exon sequences
Seq C1 exon
AAATCCCGTAAG
Seq A exon
GTACAGATAAGTATGACCCACTGCACCTCCATCTCATCTGCCATTGGCACGTTGTTCTTCTGTTTTCCATCCAGATCTCAGTGTCTCACCTGCTTCCCTTCCCATCTGACCAAGCAGCTTTAGGATCTCTGTAGATTAGAGACACTCGTTTCCTCTTCATTAATTTCCAGCCAGTTGTTGCATTTTTGTTTCGGAAGCATTACAATTAATCTGGTCATGTTTCTCGTGTTAACTCCACAAAGCATTAGCTAGTGACTCATATAACTGCATCCTGGTCCTGCTGCCATGGCCCAGGTTCCCAAATCATTTGAGTTAGAGGAGATCCTCCTTTGTATCATTGAAATGGCCGATAGAGTCATGGAGTGGCTTGGGTTGGAAGGGCAAGGATACCACTCGCTAGATCAGGTTTGCTGTAGAGGATCTGCATCATCTGAATGAATCTCCTTCCATCTCCCCTCCTTGCCAG
Seq C2 exon
GTGCCTCACGCCTTCCTCAACCTGAAGGAGCCATTCTACGTGGGGGGAGCCCCCGATTTCAGCAAGCTGGCTCGAGCTGCAGCCATCTCCACCAGCTTCTATGGAGCTGTGCAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002041:ENSGALT00000003171:34
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]