GgaINT0134319 @ galGal3
Intron Retention
Gene
ENSGALG00000003179 | ANGPTL7
Description
NA
Coordinates
chr21:4171987-4172607:+
Coord C1 exon
chr21:4171987-4172090
Coord A exon
chr21:4172091-4172412
Coord C2 exon
chr21:4172413-4172607
Length
322 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGG
5' ss Score
10.28
3' ss Seq
CTGCATTTTTCCTCTTCTAGGTG
3' ss Score
11.9
Exon sequences
Seq C1 exon
TAGATGCTGTCTATGACTGCTCATCACTTTATCAGAGGAACTATCGCATCTCTGGTGTTTACAAGCTACCTCCTGATGAATTTCTGGGGAGTCCAGATCTGGAG
Seq A exon
GTAAGGATGCAGTGTACACAGCATACATCAAGTTCTGAAATATAATACAGAAATGAAAGAGAAGGAGAGAGCATACTGAGTTATGATGCCCTGCACTTTGAGCCAGCACCTTTACATGGGCAAACATGGGAGGAAAGGATAGTTAAGAAGGGCAAACAGTAACATATTCAGATAACAGTTGGTTTTTTGTTTTAATTCTTTTTAAATAAAACAGGAAGTTCTTCAGCTTGTGAAAGCTGGAACAGTACTGTTTCTTGCCTTGTTTCACCTGAAAACAAACTTCCTAAATCTCCTCATAAGCACTGCATTTTTCCTCTTCTAG
Seq C2 exon
GTGTTCTGTGACATGGAGACAGATGGAGGTGGCTGGACTATCATTCAGAGGCGTAAAGTTGGTCTGACGTCTTTCAATAGGGACTGGAAACAATACAGGGAAGGATTTGGCAATATTCGGGGAGATTTTTGGCTGGGAAATGAAAACATCTACCGACTTTCACGACGTCCCACTGTTCTGCGGGTAGAGTTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003179:ENSGALT00000035033:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.8=91.4)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTCTATGACTGCTCATCACT
R:
TCCAACTCTACCCGCAGAACA
Band lengths:
292-614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]