MmuINT0015041 @ mm10
Intron Retention
Gene
ENSMUSG00000028989 | Angptl7
Description
angiopoietin-like 7 [Source:MGI Symbol;Acc:MGI:3605801]
Coordinates
chr4:148497283-148498088:-
Coord C1 exon
chr4:148497988-148498088
Coord A exon
chr4:148497478-148497987
Coord C2 exon
chr4:148497283-148497477
Length
510 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GAGGGTCCTCTCTGCTTCAGGTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATGCCATCTATGACTGTTCTTCCCTGTACCAGAAGAACTACCGAATCTCTGGAGTGTACAAGCTTCCTCCTGACGAGTTCCTGGGGAGCCCTGAGCTAGAG
Seq A exon
GTGAGGTCACTACTGCCCTGCCCTACCCTTTGTCCTCCAGCCCTGAAAGGTACATGGATAACAGGACTTCTTCTGGTCTATGGAAAGGGAAGTTCAAGAATCAAATGTACCCCATGATGGACTGTGAGAATGCTCAGTTTACGGGCCCCTCCCTCCACTCCAGCCCGCTACTGTCTGCAGAATCAGCTGTCCTAGTTCTTCCCGACACAGAACGAGATCAGCTCTCTCTAGGAGGAGGGAAGACACTAGAAGGAGACACGTGGAAGTACCTGATTTTCCCATTTACATTGTGTTCACACTGCCTGCCCGCCATGCCCCACTGACACTCGTTCCCAAGCTAGCCACCACCGTGCCCCCGCCTCCACGTTGGGGGCAGTGTTTCTGCTAGAGAATGCAGAGAGCACAAGGATCACTGACTCACTAGATAGATACAGCACACAGCTTGGGAAGTCTGTCCTTAAGCTCCTGCCCCTGCCCTTGCGCCTGCCCAGAGGGTCCTCTCTGCTTCAG
Seq C2 exon
GTGTTCTGTGACATGGAAACTTCAGGAGGAGGCTGGACCATCATCCAGAGACGTAAGAGTGGCCTTGTCTCCTTCTACCAAGACTGGAGACAGTATAAGCAAGGGTTTGGCAGCATCCGAGGTGACTTCTGGCTGGGGAATGAACATATCCACCGGCTCACCAGGCAGCCAAGCCGGCTTCGTGTGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028989:ENSMUST00000030840:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.8=94.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCTATGACTGTTCTTCCC
R:
CTCCAGCTCCACACGAAGC
Band lengths:
295-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types