RnoINT0017336 @ rn6
Intron Retention
Gene
ENSRNOG00000009589 | Angptl7
Description
angiopoietin like 7 [Source:RGD Symbol;Acc:7553363]
Coordinates
chr5:165313444-165314250:-
Coord C1 exon
chr5:165314150-165314250
Coord A exon
chr5:165313639-165314149
Coord C2 exon
chr5:165313444-165313638
Length
511 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GAGGATCCTTTCTGCTTTAGGTG
3' ss Score
8.9
Exon sequences
Seq C1 exon
ATGCCATCTACGACTGTTCCTCCCTGTACCAGAAGAACTACCGAATCTCTGGAGTGTACAAGCTTCCTCCAGATGAGTTCCTGGGCAGCCCTGAGTTAGAG
Seq A exon
GTGAGGTCAACAGTGCCATGTCCTACTCTTTGTCCTCCACCTTAAAAGGCACAGTGACAACAGGACAACCCTGGTCTACAGAAAGGGAAATTCTAAAAAGCAAACGTGCCCTATGATGGAGCTGTGAGAAGCTCAATTTATGGGGCTCTGCCTCTATTCCGCCCTCCGTTGGCAGAGTATCAGTCAGACATCGACTGTCCCAGTTCTTGCGACACAGAATGAGTTCAGATCTCTCTCTAGGAGAGGAGAGAAGTCATTAGGAGGAGACACACAGAAGTACCTCATTTCCCACTTACGCTGTGTTCACACTGCCCGCCCTGCCCCAGGTACACTCATTCCCAAGGTAACCATTGTGCCCTTGGCCCTCCACACTGGGGGCAGTGTCTCTGCTGGATTATGCAGGGAGCACAAGGACCACTAACACAACAGGTACAGCACATAGGTTTGGAAGTCTGTCCTTAAGCTCCTGCCCCTGCCCTTGCACCTGCCCAGAGGATCCTTTCTGCTTTAG
Seq C2 exon
GTGTTCTGTGACATGGAAACTTCAGGAGGAGGCTGGACCATCATCCAGAGGCGCAAGAGTGGCCTAGTCTCCTTCTACCAAGACTGGAAACAGTATAAGCAAGGGTTTGGCAGCATTCGAGGCGACTTCTGGCTAGGGAATGAACATATTCACCGGCTTACCAGGCAGCCAACAAGGCTTCGTGTGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009589:ENSRNOT00000012726:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0014713=Fibrinogen_C=PU(14.8=94.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCTACGACTGTTCCTCC
R:
CTCCAGCTCCACACGAAGC
Band lengths:
294-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]