MmuINT0015041 @ mm9
Intron Retention
Gene
ENSMUSG00000028989 | Angptl7
Description
angiopoietin-like 7 [Source:MGI Symbol;Acc:MGI:3605801]
Coordinates
chr4:147871392-147872197:-
Coord C1 exon
chr4:147872097-147872197
Coord A exon
chr4:147871587-147872096
Coord C2 exon
chr4:147871392-147871586
Length
510 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GAGGGTCCTCTCTGCTTCAGGTG
3' ss Score
8.85
Exon sequences
Seq C1 exon
ATGCCATCTATGACTGTTCTTCCCTGTACCAGAAGAACTACCGAATCTCTGGAGTGTACAAGCTTCCTCCTGACGAGTTCCTGGGGAGCCCTGAGCTAGAG
Seq A exon
GTGAGGTCACTACTGCCCTGCCCTACCCTTTGTCCTCCAGCCCTGAAAGGTACATGGATAACAGGACTTCTTCTGGTCTATGGAAAGGGAAGTTCAAGAATCAAATGTACCCCATGATGGACTGTGAGAATGCTCAGTTTACGGGCCCCTCCCTCCACTCCAGCCCGCTACTGTCTGCAGAATCAGCTGTCCTAGTTCTTCCCGACACAGAACGAGATCAGCTCTCTCTAGGAGGAGGGAAGACACTAGAAGGAGACACGTGGAAGTACCTGATTTTCCCATTTACATTGTGTTCACACTGCCTGCCCGCCATGCCCCACTGACACTCGTTCCCAAGCTAGCCACCACCGTGCCCCCGCCTCCACGTTGGGGGCAGTGTTTCTGCTAGAGAATGCAGAGAGCACAAGGATCACTGACTCACTAGATAGATACAGCACACAGCTTGGGAAGTCTGTCCTTAAGCTCCTGCCCCTGCCCTTGCGCCTGCCCAGAGGGTCCTCTCTGCTTCAG
Seq C2 exon
GTGTTCTGTGACATGGAAACTTCAGGAGGAGGCTGGACCATCATCCAGAGACGTAAGAGTGGCCTTGTCTCCTTCTACCAAGACTGGAGACAGTATAAGCAAGGGTTTGGCAGCATCCGAGGTGACTTCTGGCTGGGGAATGAACATATCCACCGGCTCACCAGGCAGCCAAGCCGGCTTCGTGTGGAGCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028989-Angptl7:NM_001039554:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF043567=DUF489=PD(17.6=55.9),PF0014713=Fibrinogen_C=PU(14.8=94.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCATCTATGACTGTTCTTCCC
R:
CTCCAGCTCCACACGAAGC
Band lengths:
295-805
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
Other AS DBs: