HsaINT0008026 @ hg19
Intron Retention
Gene
ENSG00000171819 | ANGPTL7
Description
angiopoietin-like 7 [Source:HGNC Symbol;Acc:24078]
Coordinates
chr1:11252327-11253831:+
Coord C1 exon
chr1:11252327-11252427
Coord A exon
chr1:11252428-11253636
Coord C2 exon
chr1:11253637-11253831
Length
1209 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
GAGTATCCCCTCTGCTTCAGGTG
3' ss Score
7.84
Exon sequences
Seq C1 exon
ATGCCATCTACGACTGCTCTTCCCTCTACCAGAAGAACTACCGCATCTCTGGAGTGTATAAGCTTCCTCCTGATGACTTCCTGGGCAGCCCTGAACTGGAG
Seq A exon
GTGAGGTCATTACAGTCACTGGCCATGCCCTAATACCTGTCCTTCACCCCCTCAAGGGGACTACAACAACAGGGCCATTCACAGTTTAAAGAAAGGAAAATTCGGCTGGGCGCAGTGGCTCACACCTGTAATCCCAGCACTATGGGAGGCCGAGGCAGGTGGATCACTTCAGGTCAGGAGTTTAAGACCAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAAAATTAGCCAGGCATGGTGGTGGGCACCTGTAATCCCTGCTACACAGGAGGATTGCTTGAACTCAGGAGGCAGAGGTTGCAGTGAGCCGAGATCACGCCACTGCACTATAATCTGGGAGACAAAGTGAGACTCCATTTCAATTAAAAAAAAAAAAAAAAAAAAGGAAAACTCAAACACAAGCAAACACACCAAACACCACAGAGCTATGCAAACACTCAGTTTATGCCCTGCACTCCAAACCCAGGCATCTGTTTGGCCCCTTCAAATCATTATCAGTCAAACAACAAGCCTTCTAACATAGATCAGATCATTCTTATAACCACCACATAACTTAGTTTAAATCTCTTGCCATGTCCTAGAACAGCTATTCCTTGGGGGAGGAGAAAAGAAAACACGAAGGCAGCATCAAATTATCTGGATTTTCACCCAGGCATGGTGGCTCACACCTGTAATCCCAAGTTTTTTGGGAGGTGAGGTGGGCGGAACAATCACCTGAGGTCAGGACTTTGAGACCAGCCTGGCCAACATGCTGAAACCCAGTCTCTACTAAAAATACAAAAATTAGCCCAGTGTGGTGACAGGCACTCTGGTCCCAGCTACTAGGAAGGCAGGAGAATCACTGGAACTCAGGAGGTGGAGGTTGCAGTGAGCCGAGATTGCACCACTGTACTCTAGCCTGGGCAACAAGAGTGAAATTCTGCTTCAAAAAAAAAAAAAGTATCTGGATTTTTCCCTCCAAGCTTCATGTGCACTCACCCCCGGGCCCAATTTGCATCGTTCTTCCAGAGCAATGCACCACCCACCCCAGCTCACCAGCAGTGGGGCAGCATCACTGCCCGAGTGAGCCAGTGTGACTGCGGGAGTGCACACATCTACTGGCTCTGCAGGGACAGGAACAGGTTGGGAAGCCTGCCCTCTTGCTCCTGCCTTCTGCCCCTGCAAGTCCCTCACCAGAGTATCCCCTCTGCTTCAG
Seq C2 exon
GTGTTCTGTGACATGGAGACTTCAGGCGGAGGCTGGACCATCATCCAGAGACGAAAAAGTGGCCTTGTCTCCTTCTACCGGGACTGGAAGCAGTACAAGCAGGGCTTTGGCAGCATCCGTGGGGACTTCTGGCTGGGGAACGAACACATCCACCGGCTCTCCAGACAGCCAACCCGGCTGCGTGTAGAGATGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000171819-ANGPTL7:NM_021146:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF071836=DUF1403=PD(6.8=23.5),PF041569=IncA=PD(6.9=26.5),PF0218118=FH2=PD(10.4=35.3),PF043567=DUF489=PD(17.0=55.9),PF0014713=Fibrinogen_C=PU(14.8=94.1)
A:
NA
C2:
PF0014713=Fibrinogen_C=FE(29.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCATCTACGACTGCTCTTCC
R:
CTCCATCTCTACACGCAGCC
Band lengths:
294-1503
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)