GgaINT0134981 @ galGal3
Intron Retention
Gene
ENSGALG00000001040 | MEGF6
Description
NA
Coordinates
chr21:997185-997627:+
Coord C1 exon
chr21:997185-997313
Coord A exon
chr21:997314-997474
Coord C2 exon
chr21:997475-997627
Length
161 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
GTCTTGCACCATTTGTTGAGTGC
3' ss Score
-13.16
Exon sequences
Seq C1 exon
AGTGCCCTGTGGGCTGGTATGGCCCCGGCTGTGAGCGGCCGTGTGAGTGCAAGAATGGGGCGCGGTGTGAGCGCACCACGGGGACGTGCCACTGCCCGGCGGGATACATTGGTGCTGACTGCAGCATTG
Seq A exon
GTGAGTGTATGGGAATGGGGTTGAGTGGGAGGGGGGGGGAAATGGCAGCATGGTGACAGCTCCCGGTCTCCCTGCTTTGGTATATGCTGTGGGAGGGCAGCTGCTGCTGATCTCATTTGCTGTCTTAGCACTGGAAACACCGTCTTGCACCATTTGTTGAG
Seq C2 exon
TGCCAAAACGATGTCTCCATGACACATCATCAGCTTTTGCATCGTGCCATCGGGGTATGGCTGCCTCTCTGCTTCTCCGGCAGGAATTCCACCACATTGGAGCTTCAGCTGCTCGAGATGGTCATAGCTGTTTCCTGCGTATGTGTATGATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001040:ENSGALT00000001544:27
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF079748=EGF_2=WD(100=65.9)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTGGGCTGGTATGGC
R:
GCTATGACCATCTCGAGCAGC
Band lengths:
253-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]