GgaINT0136021 @ galGal3
Intron Retention
Gene
ENSGALG00000003594 | Q90715_CHICK
Description
NA
Coordinates
chr22:2673281-2673723:-
Coord C1 exon
chr22:2673621-2673723
Coord A exon
chr22:2673369-2673620
Coord C2 exon
chr22:2673281-2673368
Length
252 bp
Sequences
Splice sites
5' ss Seq
AATGTATGA
5' ss Score
2.55
3' ss Seq
TCACTGTTCTCTCCTGCCAGGGA
3' ss Score
10.96
Exon sequences
Seq C1 exon
AGGAGGAGCTGGTCCCACCGAAACCCAGAACACCTGAACCCAAGGAGCAGGAGGGCAAGAGGGAGATGCTGGAGTTTGTGACCGTGACAACACTGGAGCAAAT
Seq A exon
GTATGAGGCACTGGATGGTGGGGAGGGAGTGGGCACAGGGCATGGGCCAGCCTGATGCTGGGGTGGGATGCCAGCAGGGCAGACAGTCGCAGACATTGGGTGCCAGCAGATCAAGGATGACTGTGGGCAAGGAGCATGTATCCCTGAGCTCCCTGACGGGGTCCTGCTGTGCCTGGTGGCCCTGGGGAATGGCTGGAGCCTGGGGGGCCCTGGCCTGTTGCTGCAGTGGCTGTCACTGTTCTCTCCTGCCAG
Seq C2 exon
GGAGGAATCTGCAGCTGTCCCACAGGTCCCCTGCGTGCCCCCTGAGACTGTGGTGACCATAGCAGAGGAGTCTGAGCAGATGGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003594:ENSGALT00000005683:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.914 A=NA C2=0.933
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCCCACCGAAACCCAGAAC
R:
AGGTCCCATCTGCTCAGACTC
Band lengths:
180-432
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]