MmuINT0015072 @ mm10
Intron Retention
Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:23111360-23111888:+
Coord C1 exon
chr8:23111360-23111456
Coord A exon
chr8:23111457-23111809
Coord C2 exon
chr8:23111810-23111888
Length
353 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
CTCATTTTCCTGCTTCATAGGGT
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTGACGAACTTGTCGGCTCGAAGGCTGAAAGGCGGGACTCCCGGGATGTGGGTGAGGAGAAAGAGCTGTTGGATTTTGTGCCGAAGCTAGACCAAGT
Seq A exon
GTAAGATGGGCTCAGTCGGGGTGGGAGGATCAGGCTGTGGATGGCCAGGTGCAGCTCTGGGACTCGGAGTAGAAATGTAGGTGAAAGTCAGGCCCCCTGGGGGTCATTGGGATGGAGGGGTTTAGGCAAAAGCCAGTCCTGGGTGTGACTAGGGAGGGAGAGACAGATGTGCAGGGGGACATGGGTCAGCTTGTAGATCAGGGAGTCGTTTTGTCACCTGAGATGATGTAAGGGGTGAGTGAGTCAGGTCATTACAAGTGTGCTGAAGCCTGTCACTCAGGTGTCTTAGGAATGACGTCAGGGTCCGCTTCAAATGTTCTGCTCTTTGACTGTCTCATTTTCCTGCTTCATAG
Seq C2 exon
GGTGGAGTCTCCAGCCATCCCAAGGATCCCTTGTGTCACACCTGAGACCGTTGTGATCCGATCTGAAGATCAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543:ENSMUST00000118733:24
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.647 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types