HsaINT0008048 @ hg19
Intron Retention
Gene
ENSG00000029534 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:492]
Coordinates
chr8:41555561-41557066:-
Coord C1 exon
chr8:41556970-41557066
Coord A exon
chr8:41555640-41556969
Coord C2 exon
chr8:41555561-41555639
Length
1330 bp
Sequences
Splice sites
5' ss Seq
AGTGTGAGC
5' ss Score
3.73
3' ss Seq
CTGGTGTTCTTGGCACGCAGGGT
3' ss Score
6.85
Exon sequences
Seq C1 exon
GGGAAGAACTCATCAGCTTCAAGGCTGAGAGGCGGGATTCCAGGGATGTTGATGAAGAGAAGGAGCTGCTGGATTTTGTGCCGAAGCTAGACCAAGT
Seq A exon
GTGAGCAGTGCTCCCGGGAGGGTCCCCGGGGGTGCCGAGATGCAACCCTGTGGCTCAGAGCAGGGATTCCAGAGGGAGGAAGGACACAGCAGGCCAGGCGCTGGGCTCGCTGCCCGCAGAGAGAGACGGTTTGCACCTTAGGATGAGCTAGCTCTGCACCCTAGCCACTAGGGCAGGCGGAGGCCTCCCTCACACCGTGCTGCCTGGACGCCTCTCTGCTCCTCTTCCAGGCTCCCCTCCTCTCCCACCCAGGCTCCCATCCTCTCCCAGGCTCCCCTCATTCACAGCCTTATATCCACACCCCCTCTCCCTCTTATCCACACTCAACTTCTCATCCAAAAGTTGAAGAAGATGGCCGGGTGCGGTGGCTCACACCTGTAATCCCAGTACTTTGGGAGACTGAGGCAGGAGGATCACCTGAGGTCAGGAGTTCGTGACCAGCCTGACCAACATGGTGAAACCCTGTCCCTACTAAAAATACAAAAAAAATAGCTGAGCGTGGCAGCACGCATCTGTAGTCCCAGCTACTCGGGAGGCTGAGGCAGGAGAATTGCTTGAACCCGGGAGGCGGAGGTTGTAGTGAGCCAAGATCGCGCCACTGCACTCCAGCCTGGGCAACAAGAGCGAAACTCCATCTCAAAAAAAAAAAATTGTTGAGGAAGATTCACATTAGAAACTATTGCCAGGCTAAGCTCGAACTCTTGACTGTATACCTCTGCCCCTGAGGTATGTTAGGTACAAGCCAGGGGAGATCCGGGTCTGCCTGCCTGGACCACATTTCTCATTTCCCCCTGTGACTGCTGTGAGTTATCTCACTGTGGGGCACAGTGTACACAGGGACATTTTGCAAAGCAATCTAATATCAACGACTTTGTAGAAACACTGAGCCCTAGGTGTTTTCTGAAAAGATGGAAGTGTCCCATGAACAAGCAGGGAGTGAAACCACTGGGCCATTTACTCCATTTGAATTTGCTGGACATCTGTTAGAAAGAAATACAGAGCTGTAACCCTGACCGTAAGCAACTTACGGACTCATTTGGTGGGATCGAAATGCACACCAAGTGGTCATGTAGCAACACAGAAAGATATATTGTTAGCCAGAGCGAGGATTCTGTCAACAGGTTCTAAAGGTAGAGAAAGGGGCGACAAGTGCAGGTTGGAGTCATTGGGGAGGACTTCATGGAGGAGGAGGCGGTCCTTCCACCAGGTTGTGAAGCGCAGTCAGGCTCTGGAGTGGAAAGCCGGAGGGAGAGGCTTGGAGGCAAGAGGAAGAGGAGCTGTGTGCACATGTGGATCAGCCCTGTGATGTTCTGGTGTTCTTGGCACGCAG
Seq C2 exon
GGTGGAATCTCCAGCCATCCCCAGGATTCCCTGTGCCATGCCTGAGACAGTGGTGATCAGGTCAGAAGAGCAGGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000029534-ANK1:NM_020476:23
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.318 A=NA C2=0.444
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)