Special

MmuINT0015072 @ mm9

Intron Retention

Gene
ENSMUSG00000031543 | Ank1
Description
ankyrin 1, erythroid [Source:MGI Symbol;Acc:MGI:88024]
Coordinates
chr8:24221832-24222360:+
Coord C1 exon
chr8:24221832-24221928
Coord A exon
chr8:24221929-24222281
Coord C2 exon
chr8:24222282-24222360
Length
353 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
CTCATTTTCCTGCTTCATAGGGT
3' ss Score
8.98
Exon sequences
Seq C1 exon
GTGACGAACTTGTCGGCTCGAAGGCTGAAAGGCGGGACTCCCGGGATGTGGGTGAGGAGAAAGAGCTGTTGGATTTTGTGCCGAAGCTAGACCAAGT
Seq A exon
GTAAGATGGGCTCAGTCGGGGTGGGAGGATCAGGCTGTGGATGGCCAGGTGCAGCTCTGGGACTCGGAGTAGAAATGTAGGTGAAAGTCAGGCCCCCTGGGGGTCATTGGGATGGAGGGGTTTAGGCAAAAGCCAGTCCTGGGTGTGACTAGGGAGGGAGAGACAGATGTGCAGGGGGACATGGGTCAGCTTGTAGATCAGGGAGTCGTTTTGTCACCTGAGATGATGTAAGGGGTGAGTGAGTCAGGTCATTACAAGTGTGCTGAAGCCTGTCACTCAGGTGTCTTAGGAATGACGTCAGGGTCCGCTTCAAATGTTCTGCTCTTTGACTGTCTCATTTTCCTGCTTCATAG
Seq C2 exon
GGTGGAGTCTCCAGCCATCCCAAGGATCCCTTGTGTCACACCTGAGACCGTTGTGATCCGATCTGAAGATCAGGAACAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031543-Ank1:NM_031158:24
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.654 A=NA C2=0.444
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
NO

							
A:
NA

							
C2:
NO

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000113571





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSMUSP00000072612, ENSMUSP00000081050, ENSMUSP00000081051, ENSMUSP00000081051f2840A, ENSMUSP00000106313, ENSMUSP00000106316, ENSMUSP00000112850, ENSMUSP00000113495, ENSMUSP00000113531, ENSMUSP00000113656, ENSMUSP00000116533, ENSMUSP00000117966, ENSMUSP00000133322, ENSMUSP00000133901
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr8:41698122-41699451 
LOW PSI
HsaINT0008048
(ANK1)
Human
(hg19)
chr8:41555640-41556969 
LOW PSI
HsaINT0008048
(ANK1)
Rat
(rn6)
chr16:73773224-73773576 
LOW PSI
RnoINT0017355
(Ank1)
Cow
(bosTau6)
chr27:36300496-36301889 
LOW PSI
BtaINT0017880
(ANK1)
Chicken
(galGal4)
chr22:2623100-2623351 
ALTERNATIVE
GgaINT0136021
(chAnk1)
Chicken
(galGal3)
chr22:2673369-2673620 
LOW PSI
GgaINT0136021
(Q90715_CHICK)
Zebrafish
(danRer10)
chr5:68213910-68216113 
ALTERNATIVE
DreINT0000918
(ANK1 (1 of 2))
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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