BtaINT0017880 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003275 | ANK1
Description
ankyrin 1, erythrocytic [Source:HGNC Symbol;Acc:HGNC:492]
Coordinates
chr27:36300417-36301983:-
Coord C1 exon
chr27:36301890-36301983
Coord A exon
chr27:36300496-36301889
Coord C2 exon
chr27:36300417-36300495
Length
1394 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGA
5' ss Score
4.57
3' ss Seq
CCAGTATCTTCGGCATACAGGGT
3' ss Score
3.54
Exon sequences
Seq C1 exon
GGGAGGATCTTGGCCCCAGGGCAGAGAGGCCGGATGCCAGGGATGTAGATGAAGAGAAAGAGCTGCTGGATTTCGTGCCGAAGCTGGACCAAGT
Seq A exon
GTAAGAAATGCTCCCTTTGTGGGTGGGGAGGAGGTCTCCCTCCCCGGACTCAAGGTAGAAGATTCCGGAGCAGGGAGGTTCCAGGAAGCCTGGGCCTGGACAGAGAGCTGGTCCAGTGTCTTAGGATAAGCCAGCCCTGCACCAGGGGTGCCAGGCAGGGGCAGAGGTCCCCTCTAGAGCCTTCCACCCTCCCTGGGGTCCCTGCCTCCCACTGTTCCTCCTCCCCTCCCTCAGTGCTCTATCCACACCCCTCCCCCTTTCAAACACTCAGTTTTGCACTAGAAAAATCCACTGAGGGAGATCCCATTAGAAACCATTGTCAAAAAAGGGGTGGGTTATTATAGGATGGAGTTTCCCTGGTGGCTCAGAGGGTAAAGAATCTGCCTGCAATGTGGGAGACCCAGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGGAGGGCACGGCAACCCACTCCAGTATTTTTGCCTGGAGAATCTCATGGACAGAGGAGCCTGGCGGGCTACAGTCCATGGGGTCGCAAAGAAGCAGATACAGCTGAGTGACTAACATACACACGTGTTATAGGATTATATGAAATCACATGTGTGAAATTTTGAAAATTGTAAAGCACCATAGAATTTAGAGAACCTTTCATTCAATTAAGAAATTTAAATAATAAGAAAGAAACTATTGCCAAGCTGAGCTCACAGGCCAGCCATGTCCCTCCATCAGCTGGTCCATTAGGGACTGTCCACAGAGGGTCTGCGCTGCCTGGCAGGTGTTCCTCATTCCTCCGGGAATGCAGTGAGCCGCTCCCAAGTGCATGTGTTGGCGCATGCAGGGATTCTGTGAACGAATGTGAAAGCAACAACTTTGTAGAAACACCGAGCCCTTTGGGGTTTTCTGAAAAGACAGTCATGTGCTGGCTTGCCCCAGGGCTTATGAGGGCCGTGGACCAAGGAGAAGGGAACCTGTGATTAGTATTACTGAACTTCAGTTAAAAACACAAAACTAAGACCTTGACCACAGAGAACCTACAGATGTATCTGGTAGAATGAAAACACACACCCAGTGGTCAGAATGAGATGTTACGGCCAGAGCGAGAGTTCCCTCAACAAGGGGACTAAGGCTACAGAACTGGGGTGGTGCGTGCAGGAAGACTTCCTGGAGGAGGCAGTCTTTCAACTCGGGCTCAAGACAGGCTCTGGGGATAGGCCTAGAGTGGAGAGGGGAGGCCAGGATGTAGCACCTGTGCCAGTGGGGTTCAGATGGTGGCGGCGGGGGGCGGGGGGTGGTCAGATTGGATAGGTGATCCTGGGGGTACAGAAATGTCTCACTGAGGTGCCCGGTGGAAGATGATGGGCTATGCAGAAGGATCGTGCCCTGATGTCCCAGTATCTTCGGCATACAG
Seq C2 exon
GGTAGAATCTCCAGCCATCCCGCGGATTCCCTGCGTCACACCTGAGACAGTGGTGATCAGAGCCGATGAGCCAGATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003275:ENSBTAT00000004242:23
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.656 A=NA C2=0.426
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]