GgaINT0136158 @ galGal3
Intron Retention
Gene
ENSGALG00000001608 | UNC5D
Description
NA
Coordinates
chr22:1881942-1882262:+
Coord C1 exon
chr22:1881942-1882085
Coord A exon
chr22:1882086-1882158
Coord C2 exon
chr22:1882159-1882262
Length
73 bp
Sequences
Splice sites
5' ss Seq
CTTGTGAGT
5' ss Score
7.15
3' ss Seq
TCTTGTGTTGAACTCTGCAGATT
3' ss Score
7.62
Exon sequences
Seq C1 exon
GCCTGAAGGTCCGGGAGGTGTTCATTAATGTGACGAGGCAGCAGGTGGAGGACTTCCATGGGCCAGAAGATTACTGGTGTCAGTGCGTGGCATGGAGCCATCTAGGGACCTCGAAGAGCAGGAAGGCGTCCGTCCGCATCGCTT
Seq A exon
GTGAGTAGAACGAACCTTCTGATGTTCTCGGATGTGTTGGAGTTGTAATGAATTCTTGTGTTGAACTCTGCAG
Seq C2 exon
ATTTGAGGAAAAACTTTGAGCAAGACCCCCAGGGGAAGGAGGTTCCTATTGAAGGGATGATCGTTCTGCACTGCCGGCCCCCCGAGGGCGTCCCTGCAGCTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001608:ENSGALT00000002447:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.029
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=PU(34.1=88.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACTTCCATGGGCCAGAAGA
R:
GCAGTGCAGAACGATCATCCC
Band lengths:
169-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]