GgaINT0137475 @ galGal4
Intron Retention
Gene
ENSGALG00000027365 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr23:906073-912246:+
Coord C1 exon
chr23:906073-906171
Coord A exon
chr23:906172-911918
Coord C2 exon
chr23:911919-912246
Length
5747 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTGTTTGTCCGTCTTGCAGGAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCATATGAAGTCAAAAGCCCACAGCAAAAAATGTCAGGAGATGGGCGTGTTGGTATCTTCACTGGTGGATCTGGAAGCCGAAGAAG
Seq A exon
GTAAAATCCTTTACAGTCATATATGACTTTTGCCTCTGAGAAAGGGTAGTTCCCATTCAAGCAGAAGATGTGGGGTGGTTTTGCTCCTTCCAGCTGTGCATGGGGCTGTAACCTCTCCCTGTGCTGCTGCAAGCATGGCGCTGTGGCTGATGGTTAAGAGATCAGTCCTGGCCCCCTCGTTAGGATCTGGAGCTGCAGTGCTAAGTGTGAGCAGATGCTCATGCTGCTGCCCTGATGGTTCTGCTAAGGAGATGCCCCTCTGCAATATGGAAAGGAGCTCCAGGGAATGATGTTTCCATCAGGATCATCTTGGAATGATAGAACATTAAGGTTGGAAAAGACCACTGAGATCATCTAGTCCAACCCATTACCACCATGCCCACTAAACCCTGTTCCCGAGTGCCACATCTTCCAATAACCTGCCCATCTGACTGGATGGATGACCTCAAAACACTCCAAATAACCAGTGCAGACCCAGGGGACTCTGACTGACTGGAGCAAACCTGGGCAGTGTCTGGATGCTACTGCGTGCATCAATAAACCAGGATGGGGACAGCTGCTTATCTCATCCCCAGGTCATTGCCATGTGTAGGATAAAGGTGAGCCACTCTAAAATGACTTGGACGTTTCTCAGCAGAGAAAAGAGCTGGCAGAACCAAAATAGCATGATGCTTTGACATTTGCCGGCATTATTCTGAATGCTTTACAAGATACATTTACCCTGACTCACCTGCTCATTTCTTTCATCTGCTTCTGAGTGAACACAAAGTCTGTCCAAGGGTCTCTAACCCAGGAGCCTGCCTGTGCCATGAGAAGCACACGTGATTCTCTCATTTAGTAATTTCTGCCCAGGATTACACTGGGATGTGCAGCTGAATTCCCCTGAACTCATCCCAAAATGCAGCCCTGCAGGGAGGCTGGCCAACACTGGGCAGGAGCGAGGTGGCCATGAGCACTTCTGCCTCGTTGAGAAGCATTGAAGGAAAGCTGAGGAAGGTCTCCAGAAGAACATGGGGAAGTCTCATGTGTCTGAGCCAGAAAAACAACTTTTTTACTCCGATTATTGGAGGCTGTGGTCATACAGCTGCAAAAGGTCAGGCTACCCCCATTCTTTCCCTCCCATCTCACCCCAAATCATTCAGGTATCCCAGTCCCTGGGATCTGCTCTGCCGCCTCCCGACAACGGGTTAACAGGAGCTCCATAAGGCACGCAGCACCACGGTTATTTTTATAAAGTGAGCATCAGCTGAGCGAGTTCTGGAGACGGTGCTGGGAGCCAGGGAATGTTAACTCGGCAGGAACAACAAACAGCGCTTATCACCCCGCTCCCCTGCCGAGGTCGAGTCCATCCGAAGCTTTGTTGGGAAAGGGGCTGGTTCCTGGGATGTGGCACTGCCACACGCCTCCTCATTTGTGGGTAATTAAAAGTCATTAAGTGAGGTCCTGCAGTGGGAACTGTGTTGGCCCATGTGCTTTGTCCCCAGGTTGGTTCATTAAGCAGTCTTGGGGCCGTTTGCATGCAGTCATCCCAAAGTAAGCTGCAGGTCCCCGGACGACCCCAGTTCAGGCCATCTGTGCACCTCCCAAAAACTATCAAAGCAATGGCATCAGGGTGGCACCCTCAGCTCACCAGCCAGGATCTGGGGCTGGCACAGCACAGTTACACCAGCCCAAGCCCCCATGGGCTCCTGGTGTAGCAGCACTGCACCCTCAGGTCTGATTCGGGCTGGATGCAGTCCTGGGTGGCCAGGGGATGAGGATGTGGGGGAAACAAAGTGCCCTATTACACTTCCACTGGCATTTCCAGAGACTCCCATAGTGCCTTTCCCATCTTCTGTATCTCCTTTGCCCCCCGTTTACCTTCTTAAAGCTATCTCATTCATGCAGCCAACAGCATGCTGCCATGCTTCAAGGGGTGGTTCCCTTCCTGTTGAAATTTCCAGGCTCTTGGCTTTGACCCAACTCTTTGGTGCAACCTTTTGGCCGGACTGAGACACACTGTGCTTAGCTGTGGCCTTTCTGCAGGAAGACATGGCCAAAAGGGAACCTGGCTGGGGATTCCATGGAAGCTGTCCTAAAGGAGAGCTTTTTGTCCTCCACGACCCCCAGGCCCTTCTCTGCAGGGCTGCTCTCAGTGAGTTCTTCTCCCAGTTCCTTTCCCAGTTCACAGAATCATAGAATGGCTTGAGTTGGAAGGGACCTCAAAGATCATTTGGTTCTAATACGTTTCCAAATTCTCCCGTTCTTCCAAATTCTTTTCCCAGTTCTTCCAGTTCTTCTCCCATCCAGGTAGGGAAAGAGAAAAGAGGCTCCTGAAGTGTAGGAAAAAGGAAAAAGTCTTTTACAGTGAGGGTGGTGAGGCACTGGAACAGGTTGCCCAGAGATGTAGTGGATGCCCCATCACTGAAGGCTAGATCAGATCCTGGGCAACCTCATGGAGCTGTGTGTATCCATATTCATTGCAGGGGAGTTGGACTAGATGACTTTTAAAGGTCCCTTCCAACTCTAAGGATTCTTTGATTCTATGATTCTAAGTGTTGATTGTGTGAGCCTGAAAAGCAGCTGTTATTTTAAACCTTTCCATTATAGTCAATTAGAACTAATGAATCAATCACTGGAGCGTCACTTTTGAAAACCTGCAGATCAGAAGTCCTATTTCAGTTGTGAGGACAGAGCTGTAGGGGCTCACTGTGCGAGTTGGGGGATGCTTTGTTCCTCATTTCCTTCAGCCATTCCCCCCAGGCTCACCAAGGGACAATGGCATATAGGGTCAGATGAGGAGGATGCTCTCAGCCTTCGGCCTCACTCATAGAAAAGAGATGTAAAGCTGAGAGCTCAACAAAGGCTGGAACCATCTGCTTGAGGATGTGATTTTTTGGCCCTCATCAAATCACTGGTCCCCAGTGGCACATGGATACCAACAAGGAGAGATCCTGTGGAGGGACGGGAGCCCACGAGCTCCAGGACAGGGCTCCTTGCCTTGTTGCTGTTGGCTGCACAGCAGCTTGCTGGAATGCATTGCACTGTCTGGACTTCATTGCATTATGCAAGAAACCCGCATAATTTTAGAATTACAAAAATATACAGTCCCCGTTTCCTCCCATTGATGGAGACCATTCGTGTTTGTGTAAAGGGGACCATCTGCCAGGAAGGAATGCAGAAAGGTGAAAGCAGAAGGCACAGTGTCAGCGGAGCGTTTCCATTCTCTCCTCCCATCTTCTTTCTCACCTGATTTAATCTAACGCCGAACCCTTGCTGAAATTTCAAATATTCGGGAGGCCCTTTGCTCACAAATGCCAAGCAAATCCTAAATAAAACAGCTGAGAGGAAAGTCAGAAAATCATGTTTGGTACTGTAATTGTTGGAGGTGTGTGGATGGATGAGAAAAGAGCAGAGGGATGACAGAGCAGCGAGTGAGGAATCGGAGATTGCAGCTGCGTTGCAGTGTGGTGGGTTGGAGATCGCCTTCCCATGTGGGCTCAGAGCAGAGCCTGCTGCTGAGGAGTTTAATTAAAAAAGTAAAAATGTGCCACAGCCCAGCCCAGGAACGAGTGCTGTGCTCCCCTCTGGGGGCATGCGGGGAGGGAACAGCCGTCCCTGCAGCTCCCTGGATTATTTTCAGCTTGAGCCGTATTTCACTTGATTGTTTTGCTTTCTATTTAAGGGGCAGGGGAAAGAAGGGGGTGTGACTATAAAAGGAGATTGGAGCATAATTCTTCACTGTTGCATTGGTTTGGCTTGGTGTGACCGCACCAGATTTGTGCAATACCGCGAGGGTAACGCAGATGTAATGAAACAGCATGCAGAGCCCTCCATGCCATCAGTGGGGCAGTTTTTCCCTCCCTCTCTGTGCTCTCCTGATGTGCCCTTGCTCTCCCTAGCCGTTCAGCAGGATGTTTTTCTGCTGCAGAAATCCATGTCTGAGCTCTCTATGGAGCCTGCGATGATCCCGCAGCACCGTCCCTTTGGGATGCCCCATGGCTCTCTGAGCTGTTTCCCCCCTGTGGGAAATGCAAACAACACCCCAGCGCAGAGCTGGCTTCGCGTTTCCCTCAGCCTGTCCTTCTGACCTTGCTGTCTGCTCAACTGAGGCCAAAACAAGGAGACCACACAGGAGACGGCAGCAGGGCTGGGGCTGTCCATCCCCATGCCTGTGGATGTCGACCCCACAGACCAGGACAGTGATAGCTCATAGCTCTGGTACTGAGCTGCCTTCCCTTTACAGGCAAGAAGTATGCACGGGAGAATGAGCCTTTTTGGAATAATATTTGTTCTGAAGTCAGCTCCTCTGGGAGTTTGCACATAGCCCAGCGCTGGATCCTGGGCCCAGCAAACCCCATCGTTATACAAGCATTGCACAATGCTCTTGGTGGAGAGCTGCTAAATGCATGTCTTGTTCCACTGATATCTGAGGGTTGCCAAATACTTTGTGAGCATTTACCAGTAAGGCCCTGTTATTCAAAGTAAGCTGAATTAGGCATTTATCCACAGATCTGAGGGACTTCTCCCTGTGTGGCCGTGTTCCTCCTGCAAGCCACCAGGTGTGGTCCAGCTCTGCGCTGATTCCCTGGAGCCTCCCCTTGGCTCGTTCTGCTCATGGCAGCCCTACATGGAAAACTTCAGTTTGGAGGAGAGCAGCATCTTATGCTGAAGAGGGGGAGGGGAGGGGAGGGGGAAGATAAGAAGCCAGAAGTGCTGCAATTAGTGCAAGTGTCAAAGCAACATTTCCCTTGCACAGCTGGGAAGCAAGCATGCCTCAGCAGCACAGCACCCATCTTCTTGGTGCCTGGCGTTAGCACGGTTTGAGAAAGTGGTGTTTTATGGGCCCCTCCAGAGCAGTGGGGACTTGTGGAAAGCCTCTATCAGTGCCATTTTGTTGAGCTATAGTGACATCCAGTGGCTGTTCCCAGTGGACCTTTGCAGGCTGAGTTTTGCTTTATCCAGCCCTGCTGCACATCTGGCATGGGAAATGCAGGTTTTCTCTGTGCAGTGCAGAGGGTGAGCCAGCAGCTTGGTATTGATCTCATAAAGCTTCTCCTGGCTCTTTGAGTAGAAGAGATCTACTCTATGGGCTATGGGATACTCTATGGGATACTCTATTTTAAATTCTTCACAATTTGTTTTCTTAAATATTCCATGGTTTACAATCTCTTATTACCAAAGCATCCCAAACATGTCTGCACTATAGCTAGATTTGACCAAAATAAGGGGAAAACCACCGAGATTCTTTCTTTTTTAATTAAAGCCCTGTCTTGCTAATATTTAAATGTCATATAATTTAGACAGGACAGGCCTGACATGTTGGCTACCTGCGTTTTGGCAGCTCTAGAAGTTTTGTGGGGACCACTACAACAAACAGTGGTAAAAAGCACATCAAAGGATGATGGTGCTGCTGATCTCCATGTCTAGTAAGACCTTTCTTAGTGTTCCTGAAGGAGCAGAGGCTGTGTGATGGTGTACAGCAGTAGCAGGGGCTGATGGCAGAGTGCTGGCAGAGCAATGGTTGGAACGAAAATTTGAGCAAAGCAGTGGTGGGATTCCAATGGTGGGATTTGTGGGTTCAAGGCAATGAAACCACCAGGGGGAGAGCTGGAACAGAGGACAAGGCTGAAGTATGAGGCAACTAATCTAGGAAATAACTGGGTCTTCCTTCCTCTTGTCCCGTGAGATCTTTGGAGCAGGTTTAGCACAAACCCATCCTCTGTTTGTGTCTTACACTTCTTGTTTTGTGTTTGTCCGTCTTGCAG
Seq C2 exon
GAACCAGTGAAGACCTATTCCAGGACTCTGAGGGGCGGGAGGGATCTGAGCCTATTGAGGAACACCAGTTTTCAGACCTAGAGGAATCTGATGATGATGATGACAACGAGGATGATGAAGACGAGGAGGAAGAGGAGAGCCAAGATGAACCACCTTTAAAGCTGCCGGAAGCCAAACACCCCACCCCACTGATGCACTCTTCAGGTGGCTCTCCGACTTCTCAAGAGGAAGGCACAGAAACAGCATCGTCCTTAGCCCAAGAAACTGCTTCCAGCAGCCAGAAAGTCGGTGAAGGCCAGCAGGGCTCCTCCTGTGGGCTGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000027365:ENSGALT00000045163:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]