MmuINT0077952 @ mm10
Intron Retention
Gene
ENSMUSG00000028634 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:120128276-120132629:+
Coord C1 exon
chr4:120128276-120128362
Coord A exon
chr4:120128363-120131721
Coord C2 exon
chr4:120131722-120132629
Length
3359 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
ATCCTGTGCTCTCCCCTCAGGAA
3' ss Score
11.53
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCACATGAAGTCGAAAGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
Seq A exon
GTACTGTACCAACCTCCTCTTTCCCTAACTCCCTCTCCACTTCACATCCCTCCCCCTTACCCCTGACCTTCCCCCTTTCCAGACACCCTCATTTCTACTACTGTTCCCCTTCCTCTCTCTCCCTCCCACCATCTTTCCCTTCTATGTCCTCCCTTCTAGTTTGCTGAACAACTGGGAAGCAGCAAATGTTAAATTCATAAAATGCTCCCCAGTGCCACAGAGCCAGTCACTGTGCAGTTCAGTATAACCTAGTGTTCCAGCAGAAAGCCAGCCCCAACGGGAACTCGGCGCACCCAGTGTGTGCCAAGCACAGTCTAAACACGTGCCTTGAGTTGTCTTAGTGGGACCTGGATAGATCTTCAGGCACTTAACTAGAAGTCTCTTCTGATAGGAACCTGCAATGTGGTCTGTGGGACTGCGAGTGTCACTGAGAAAGGCAAAGCTAGATCGGGTAGGTCCATCCCTTCTCGGCCCTGACACATCACTACAACCTGACTATGGTCCTCCAGCATCAGAAACAAGCTAGAGGCAGACTGATAGCAGACAAGGCAGGGGACACGGGTAAGGAGGGAGGCCAGAGGGGCTGCGGCAGATAGAATGACAAACCTTAGCTGTAGATTCTCAGGAGTCAGGGTCAGGGCTTAGTGTGACAAGACGAAGAAGGGAGTGGGTCAGGGGGGTGGGGGGCAGAGAAGAAAGGAGAAAGCTGTGGTTTTTATTTTCTGTTTGTGAAGCAATCTAACAAGAGTTAGATCATGTTTCTTTTAACACTGAATAAACCAATGTTTACAACAATCCACTCAAAGCACTGTCTTCACAAATTATAATGTGAGGCCCCCATGTTGTCAAAATGCATGCCAGGCTACTATAGATGGTGTCCTGGCGAGGGCCCTGTAACATAAGCCCAGACATGGGACCATGAAGGACCATGAAAGACAGGGGGCCTTGGCTGACCTCTATCCTCTATCCTTGAGTATAATGGGAGTGATACATATGTCCTCTGCCTGTGTGCGGAGAACTCCAGCAGGGGTGTAGGGATGTGATCTAGGCCAGACACATGAGCACAGTTCAGGTGAGAAGTGGTCTGATTCCAGATGCTTTCAGAGACTGAGCCCATAGATGGTCCTGCTACATCATAGAGGGCAGAGGAGGGGAGGGAAAGGGCCAGGGATGGCTCCAAGCTTTGTAACCTAAGAGACTGGAAGGATGGAGTTGTTACTTCATGCACCAAGGCAGACCCAGCGACGGGCATTAGGATCTGGGTATCCTAAACATAGAGTTGGTAGCAGGAACTGCCCTGAAGAGCACCAAGCCAGGATGCCCTAGCTCCAGCACACTGCTAAGGAATGGGTTGTCAGCCACTGCCACCCTGTGGCCAGTCTTAGAAACTGCACCCAGAAGGTTCTGTCCAGTGCCTTCCACTAGATTTGAAAGCACTAAAGGCAGAAAAAGGCCCATATGGAATATCAGGAAAGGGGGGGGGGGTGCTGAGCAGGCAGGGGAACCCTTTAGATGCCTGCAGGAATCAGATGTGGAGTGCCTGAAGTAGTGTGGTCTGGAGAGGGCTTCTTCCATCATCCCCGCCACACTGGGACTCATACAGGGGGCCTTCACTTTCTCCTCAGTAAAGAAGGGCTTTGGGGCCTGTCTTGATGGATGTCAGGAGATGCTGGCCCCAACTCCCTCCCCAGTCAGGACCCTGCTTCAGCCTTCATGTGCAGATGCTAACAGTGCCACCCTGGCCACCTGCCTATGGGAGGGGGAGACACAGACAGAGGAGATGGTAGCAGACACAAAAGGACATAAACCAGCCATTGTCACCCAGCAAGAGGAGGGCAGGGTGGGGATTCGTGGCTGCATCTGCTTCTCAAAGCATAATGCCATTTTGAACTGTAGTGTGAGACGTGAGGACTATGAACCTTAGTTCTGACTAGGCCAGGAGATAGCTGGATGATTGTGGGGCAGGCCGTGGCCTTCTCCACGCTTGGGTTTCACTATGTGAGTGAGGGCCAGGGCTGAGTAAAACCTGAGGCCTGCAGTCAGGGCTCCTGCCAAAGTCCTAGGTCAGCAGAATGAGCTGATGCAGGGCTTTGCCCCTCCCTCCATCCCCTGTCTGTTATGTCTCCCATCACCCATTCCCCTCGAGGCCTCGTCTCTTCGCTCCCATCTGCCCAAACTCTGCCCTTGGAACCTCCCTCTGCCTGACAACTCCTTCTCTACACACAATTTTCTCTCTCTTTCCTAGTGAATGTTCACGTTATCCACTTTGGTACCTGACCATGGAGGTGTTAGCATCACTGTTTCTGGCCCTCCTGGGCATGGTGGAGAGCCAGGGCTCGGGGACTATCTTTCCTGACCAGGAGAAAATGGAATATTGGTGCCCGGGCGAGCGATAGGGATAGTGGACACATTAGGCCACCTGGAACCAGTTCAAACTGGTCATGTCACAGCAGTCTAGTGATGGGCCAACAGAGCACAAACTCTCCAGGTCATCCCCCAGATTGTGGACAGCTGACCATTTCAGGGATGCCTCGGTCTCCATTGCTGATGGTGGCACAGCCTCACCAGCTGATGGAAACCTCCACTCCATAAGAATCCAGACCCGGAAGCTGACGTTCAGAGTGCTCCACAGGGCAGGAATGGCAGGGGTCAGGCCTGCCCTAAAGACTGAGGCCAGCCTAGCCCAGCAACTCACAGAAGCTAAACTCTGCCATCTGCCCAGAGCCGCTGTGTAGGCCAGCCTGGTCATGTTAGCATCTGGTTTGCATTTTAACTGACCGTGACTGTCTGCTGGACCAGCCAGCATGCCCTGTCCCAGAGTGATAGATGCCATCAGTAATGGGGTCATAGTGGCTGTAATTATCTGGGCCCTTGCTGTGTACCAGGCCTGCATTATTTTTTCCTCTCAGAAAAAGCCATACAGTGAGACATCCACTTAACAAAAGGAGAGACTGAGGCACAGCATTACAGCTGGCTCGTGGTGAAACCCACACTGAGAAACCAGAAAGCAGATGATCTTGTTTGCCCCAGTGAAGCCCTAGGCCTTACTTGGGAAGGTTACCTGATCCCCCTTACCTCGGTTTCCTTATCCACAGCATGAGCGTAAGAATAGAACCCCCAGTTCCCCAGTGATGCCAGGATTCTTTGAGGGCTACATGAATTCACGTACCTAAAGCCCGCAGAGCTGAACTTGTTCGTCGAGGCATGAGGTCATTGTACACTATTATTTACAGAGTATTCTTCTATCTGCTATGTCACTTGGTCGTCTGCCACGTGGCACTGTGCCTAGTTGGCAGGCAGTGAAACCGGGCTTAGCCTGAAGTGGCTGTAATCTTGAGTATCCTGTGCTCTCCCCTCAG
Seq C2 exon
GAACCAGTGATGACCTGCACCAGGACTCAGAGGGGCAAGAGGGCGCCGAGGCTGTGGAGGAGCACCAGTTCTCAGACCTGGAGGACTCTGACTCAGACTCAGACCTGGATGAAGATGAGGAGGAGGAAGAGGAGGAGGAAGAGAGCCAGGATGAGCTGTCTGGGCCATGCTCGGAGGCAGCTCCGCCTTGCCTGCCCCCCACACTACAGGAGAACTCCTCACCCGTTGAGGGCCCTCAGGCTCCAGATAGCACTTCTGACGAGGTCCCGCAAGGCAGCTCCATCTCAGAAGCCACGCATTTGACCGCCAGCAGTTGTTCCACACCTAGCCGGGGTACCCAAGGCCTTCCCAGGCTGGGACTGGCCCCACTGGAGAAGGACATGAGCTCAGCCCCGAGTCCCAAGGCCACGTCCCCTAGGAGGCCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCGCCCCTCACTCACTCGCAAACATTCACTCACCAAAAATGACTCGTCTCCCCAGCAATGTTCACCGGCCCGAGAAGCTCAGGCCTCAGTAACGAGCACACCTGGTCCCCAGATGGGCCCAGGAAGGGACCTGGGCCCTCACCTTTGTGGGTCTCCAAGACTGGAGCTGTCCTGTCTCACTCCCTACCCCATAGGAAGAGAAGCGCCCGCTGGACTCGAGCGTGCCACAGACACAGGCACCCCCAGATATTCACCCACCAGGAGATGGTCTCTGGGTCAGGCCGAGTCACCGCCACAGACAGTGCTGCCAGGGAAATGGGCCCTGGCTGGGCCCTGCAGCCCCTCAGCGGACAAGAGTGGCCTGGGCTTGGGGCCGGTTCCACGGGCCCTCCTCCAGCCCGTGCCTCTACCTCACACACTTCTCAGCAGAAGCCCTGAAACGTGCACCTCTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000028634:ENSMUST00000106307:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.833 A=NA C2=0.934
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types