BtaINT0072280 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020745 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr3:105260986-105264993:+
Coord C1 exon
chr3:105260986-105261072
Coord A exon
chr3:105261073-105264967
Coord C2 exon
chr3:105264968-105264993
Length
3895 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
CTTGCTCTTGGTGAAGCCAGGAC
3' ss Score
-1.43
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCATATGAAGTCGAAGGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
Seq A exon
GTAATGAATTGCCAACTCCCTCCTCCCCCTCCCCCCTGCCCACCTTCCCCTCCCTCCCCTGGCCCCCTTGCCCGCCCTCCCCCTCCTTTCTGTCCTCCTTGCCTCTACTCCCCCTCCCCTTCTCCTTCCTCACCCTCTTCCTCACCCTCTTCTCCAGTCTTCCCAAATACAAAGAGACAAAGGCTAAGTTCACGGAACGATGGCACCCACGCCCCTCCTTCTTACAGCACGCGCCTGGAGCCAGAGCACTTGAGCATTGCTGACTGTCACGCAGGTAGAGCACCCGGCACCCGGTGGGTGCTCAGTGAATGTATGGTGGTTACATTAATACACGAGTATTATAGTCAACATCGATTGAGCATCCACCTGTCAGGCATACTCTAGACACGTGCCGTGGTTATCTTGGCAAACCCTCACAATGACGCAGTGAGGTACATACTTTTATATGCTCCACACCCACACTCACACCTCCACACTCTGGACATGGGCTTGGTGCTCAGGTCTTTTAGAGCTAGGGGCTTTCAAGAGACCCAAAGCCAGGCAGACCTGACAGCCCCCTATCACCTCTCAATCCCACCCCACGTCCCAGCACCACACCCCAGCCTCAGTCCCCCAGTAGCAAGAGTAGAGCCATATTAGGGCCAGTTTCTGTGAACACAAGGCAGAGTGGAAGGTGAGTCCAAGTCAGCATGTCTGGCCGGGCCCTGTCGGGCCTCAGCATCCAAGAAGGAGGCCAGAGCAGCTCTTGGGGGTAGATAAGCAACCAGAGATATTCTTCTGCAGTGAGCAAACCTTTGGCCAGATCCCCTAAAATCAGGGTCAAGAGAGTGTGAAAAAGCGAGGTGTGTGTTCCTGTGTCTTGTTTCTTTCTGTTTATCTGATTTGGGAATGTATGTGCAGTCTTAAAAACAAGTTAGATCATATTTCCTTTTAGGTGAAATGAATCAGCTTTATTGAACAGAATACACTGAACTCAGAGCTGTGGCCTCCAAAATGAGAATGTGGGGTTACTGAGTTGATCAAGAAAGCACGTCAAGCCATTTACAGATGTCTTATTAAGTCCTCATAACTGTGGTAGAAACTGGTGTCACTCCTTTTTAAACTGAAGACATTTATTAAAGCTCAAACAGGTTATGGAAGTTGTCTGAGGTCAGGCAAAAACCACTCCATGTGGCTCCATGCCACTCCAGTGCCTGGGGGGCTGGACAGGGGAGCTGCACCCAAGCCCAGAGCCCTGCCTGGGTGGGAGGCAGGGTGTGTTCACTAGCACCGCACCAGGGGTCCACTGGGCAAGTTCAGCTTCATTTTCCCAGTGAGGCCGAAAATGATGACCAGATGACCTTGTTTGAGAATGCCTGAAATCAGTGCAGTCGTTCTAGAAATAATTCCTGCCAGCACCAGCCCTATTCTAAGTCCTACTCTAGGTACTAGAGGTTCTTCAATGCATGAAATATAGTTCCTGTCCTCAGGAAGCCTGCATTCTAGAGGGGAGCCGGGTAGTGAACAAATGTGGAATAGGGCAAGGGCCTTGAGTATGAAATAAAGCATCCATGACAGGTAGGGAAGTGTGGGGAGTGGCCTCTCTGTTTAGGTGATGTGAGCCGCGAACATGAGGCAGGGGGTCAGGAAGCCACGTGGAGCCTGGGGAAGGGCTCTCTCTGCAGGTGGAACAGCGGGTGCAGAGCCCCTGAGGACAAGAGTTGGGAAGTCAGAGACAGCTGCGGCTGTGAAGGTCAAGGGATGGGTTTAGCCGCCTGCTGGAGCGACTGCCCTGACTCTGTACGCAGAGGATGGCCGGTAGGGGGCGCGGCTGGAGGCAGTGATGCAGGCTGAGCACGTGTTGGACTGGGGGGGGCGGAGGGAGGTGAAGAAACGTGCTGTTAGGTTTTGCTGACACATCAGGGCGGGGGCAGGTGGAGGGTGAACGCATGAGAATAAAAGATCCAAGGATGGTTTCCGAGGTTTATGGCCTAGGAAACTGGAAGGATGGAGTTGCCATTTCCCGTGATGATGAAGATTCAGGGAGGAGCTTGTCTGTTAGACGCGAAGTGGTTGGGAGGTGGCCAGGCCGGCGCCGCAGCCCCGCCCCTGAGGGTGAGGAGGTTGAGCACCAGCGCCACCGTGTGGCCAGACCTCCCCAGCGCCCCGGCGCGCTTCGTTCCACCCGTCCCTTGGCTCCAGAGAGGCGGGACTTTGTGGAGATTGACAGTGAGGGGTATTAGGAATTATTGATCGGCAGGGGCCTCCCGTAGAGCTCTGCAAGAGCCCAGATGTGGGGGGCCTGGCGAACCTTGTGCTGGGCACGGGAATCTTGGATTCCGTCACTCCTGAGTTGGGTGCCTAGGGCAGGGCACCAGCCCTCTGTCCCTCAGCGTCTTCATCTGTTACAGACTTTAGGATCTTTCCTGCCAAATATCAGGAGCCGCTGATCCTGACTCCCTGACTGGTAGCACTACCCCTCTGACCTTCAACTGCAGCATGAGATGCTGGCCGTGCTGCCTGTGTGTTGAGGTTGTGGGGTACTTGGGGTGAGAAGAGCTGAGGTTTATTGGGTACTTACTAGGTGTCAGACCCTCACAATCCTCTCAGCAGCTTCATGAGGTGGCTTTTATTATTCTTACCCCCACCCCCACCATTTTACAGACAAGGAAACTGAACCCAGAGAGAAAAAGTAAATTATTCGACATTGCACAGTAAGGAAGGGGTGGGACTGAGATTCAAACCCAGACCATTTCCTGCTTCTCAGTGCATAAAAACATTTTTAAACTGGCAGTGTAATGATGTAGGGGTTATAAACCTTAGTCCTGACTCAGCCATTACTTTCTGGGTGACCTTGGGGAAACATTTGCCTGCTCTGGGCATGGGTTTCCCCACAGGTTGATGAGAGGTGAGGCTAGGTGAACTCCTGGAGCTAAAGTCTTAGGGCAAAGCTTTAGGGTATGTTTTGCCTCCCCCTCACGACCCCTGCTCTGTGGTCCCCAGCCCCTTCCCCCTCTCTGGTCATTCTGCTCCCAGCTGCCAGGAGGTCATGCCCTTGGCCTCCCTTCACCTGACAGCTCCACCCCGCAGTTTTTTATCTACATCCTCTTGCATGCCCGACTGTCATCCATTTGCTGAGTGCTGAGCTGTTTGAAAGCACAAATGCTGGGCTTTCTGGTCCCGGTGCAGCTTGGCATAGTGGGGTCCAGAGAAGCATGGTTGTACCAGTGACCTGAGTCAGCTCATGTGTCCAGCTCTCTTAGTTAGTAGTTGAGTGGATGCTGACATGAGCGTAGTGTTGGGCCAGCAGGACCCAAACCCTCAGGATCCTGCCAGGTGGGCGAGATGTTAGCGGAGCTCTCCCCAGAGTCCTGATTGCTGCCAACTTCAGAGATGCCCAAACTAGGTCTGTGTCCTGTTAGAGCTGACCCCGCTGGTGGGGCTGCCCCAGCAGAAGTCAGACCAGGAGGCTGGTATTTCAGAGCTCTACTCTCCTCCCCAGCTGGGAGCACCAGGGGTTCTACAAGCACCTTCTCTGGACATGAGTGGCTGGGAAGAGGCCCTCTCCGCAGGCTGAGGTCAGCTTAGCCAAACCTTCCAAGGGAACAGGGCCTGCCACCTGCCAGATGCTATTGTGCCAGGCATCAGCAGCGTGGCCACAGTGGCAGGTGTGTATGTGAACTGACCGTGCCCAGTGCTGCTGGCCCCGCCAGCATGGCTGCTGTATTCCAGAATAATAGATGTCTCCATGAATGCGCTGAGTGGCTACAGTTATTAATATTTGAGCCCTTGATATGTGCCAGGCTTGTGTTTCCTCCTCCTAGCAAACCTTATGAGATGAGACTGTCATATTCATTTGACAAAGATGGAGACAGAGGCCCAGCAGAGTGACTTAACTTGCTCTTGGTGAAGCCAG
Seq C2 exon
GACTGAATACTAACCAAAAAGAAAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020745:ENSBTAT00000027644:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF065247=NOA36=FE(19.5=100)
A:
NA
C2:
PF065247=NOA36=FE(5.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]