MmuINT0077952 @ mm9
Intron Retention
Gene
ENSMUSG00000078582 | Hivep3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:MGI Symbol;Acc:MGI:106589]
Coordinates
chr4:119800881-119805234:+
Coord C1 exon
chr4:119800881-119800967
Coord A exon
chr4:119800968-119804326
Coord C2 exon
chr4:119804327-119805234
Length
3359 bp
Sequences
Splice sites
5' ss Seq
AAGGTACTG
5' ss Score
8.56
3' ss Seq
ATCCTGTGCTCTCCCCTCAGGAA
3' ss Score
11.53
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCACATGAAGTCGAAAGCCCACAGCAAAAAGTGCCAAGAGACGGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
Seq A exon
GTACTGTACCAACCTCCTCTTTCCCTAACTCCCTCTCCACTTCACATCCCTCCCCCTTACCCCTGACCTTCCCCCTTTCCAGACACCCTCATTTCTACTACTGTTCCCCTTCCTCTCTCTCCCTCCCACCATCTTTCCCTTCTATGTCCTCCCTTCTAGTTTGCTGAACAACTGGGAAGCAGCAAATGTTAAATTCATAAAATGCTCCCCAGTGCCACAGAGCCAGTCACTGTGCAGTTCAGTATAACCTAGTGTTCCAGCAGAAAGCCAGCCCCAACGGGAACTCGGCGCACCCAGTGTGTGCCAAGCACAGTCTAAACACGTGCCTTGAGTTGTCTTAGTGGGACCTGGATAGATCTTCAGGCACTTAACTAGAAGTCTCTTCTGATAGGAACCTGCAATGTGGTCTGTGGGACTGCGAGTGTCACTGAGAAAGGCAAAGCTAGATCGGGTAGGTCCATCCCTTCTCGGCCCTGACACATCACTACAACCTGACTATGGTCCTCCAGCATCAGAAACAAGCTAGAGGCAGACTGATAGCAGACAAGGCAGGGGACACGGGTAAGGAGGGAGGCCAGAGGGGCTGCGGCAGATAGAATGACAAACCTTAGCTGTAGATTCTCAGGAGTCAGGGTCAGGGCTTAGTGTGACAAGACGAAGAAGGGAGTGGGTCAGGGGGGTGGGGGGCAGAGAAGAAAGGAGAAAGCTGTGGTTTTTATTTTCTGTTTGTGAAGCAATCTAACAAGAGTTAGATCATGTTTCTTTTAACACTGAATAAACCAATGTTTACAACAATCCACTCAAAGCACTGTCTTCACAAATTATAATGTGAGGCCCCCATGTTGTCAAAATGCATGCCAGGCTACTATAGATGGTGTCCTGGCGAGGGCCCTGTAACATAAGCCCAGACATGGGACCATGAAGGACCATGAAAGACAGGGGGCCTTGGCTGACCTCTATCCTCTATCCTTGAGTATAATGGGAGTGATACATATGTCCTCTGCCTGTGTGCGGAGAACTCCAGCAGGGGTGTAGGGATGTGATCTAGGCCAGACACATGAGCACAGTTCAGGTGAGAAGTGGTCTGATTCCAGATGCTTTCAGAGACTGAGCCCATAGATGGTCCTGCTACATCATAGAGGGCAGAGGAGGGGAGGGAAAGGGCCAGGGATGGCTCCAAGCTTTGTAACCTAAGAGACTGGAAGGATGGAGTTGTTACTTCATGCACCAAGGCAGACCCAGCGACGGGCATTAGGATCTGGGTATCCTAAACATAGAGTTGGTAGCAGGAACTGCCCTGAAGAGCACCAAGCCAGGATGCCCTAGCTCCAGCACACTGCTAAGGAATGGGTTGTCAGCCACTGCCACCCTGTGGCCAGTCTTAGAAACTGCACCCAGAAGGTTCTGTCCAGTGCCTTCCACTAGATTTGAAAGCACTAAAGGCAGAAAAAGGCCCATATGGAATATCAGGAAAGGGGGGGGGGGTGCTGAGCAGGCAGGGGAACCCTTTAGATGCCTGCAGGAATCAGATGTGGAGTGCCTGAAGTAGTGTGGTCTGGAGAGGGCTTCTTCCATCATCCCCGCCACACTGGGACTCATACAGGGGGCCTTCACTTTCTCCTCAGTAAAGAAGGGCTTTGGGGCCTGTCTTGATGGATGTCAGGAGATGCTGGCCCCAACTCCCTCCCCAGTCAGGACCCTGCTTCAGCCTTCATGTGCAGATGCTAACAGTGCCACCCTGGCCACCTGCCTATGGGAGGGGGAGACACAGACAGAGGAGATGGTAGCAGACACAAAAGGACATAAACCAGCCATTGTCACCCAGCAAGAGGAGGGCAGGGTGGGGATTCGTGGCTGCATCTGCTTCTCAAAGCATAATGCCATTTTGAACTGTAGTGTGAGACGTGAGGACTATGAACCTTAGTTCTGACTAGGCCAGGAGATAGCTGGATGATTGTGGGGCAGGCCGTGGCCTTCTCCACGCTTGGGTTTCACTATGTGAGTGAGGGCCAGGGCTGAGTAAAACCTGAGGCCTGCAGTCAGGGCTCCTGCCAAAGTCCTAGGTCAGCAGAATGAGCTGATGCAGGGCTTTGCCCCTCCCTCCATCCCCTGTCTGTTATGTCTCCCATCACCCATTCCCCTCGAGGCCTCGTCTCTTCGCTCCCATCTGCCCAAACTCTGCCCTTGGAACCTCCCTCTGCCTGACAACTCCTTCTCTACACACAATTTTCTCTCTCTTTCCTAGTGAATGTTCACGTTATCCACTTTGGTACCTGACCATGGAGGTGTTAGCATCACTGTTTCTGGCCCTCCTGGGCATGGTGGAGAGCCAGGGCTCGGGGACTATCTTTCCTGACCAGGAGAAAATGGAATATTGGTGCCCGGGCGAGCGATAGGGATAGTGGACACATTAGGCCACCTGGAACCAGTTCAAACTGGTCATGTCACAGCAGTCTAGTGATGGGCCAACAGAGCACAAACTCTCCAGGTCATCCCCCAGATTGTGGACAGCTGACCATTTCAGGGATGCCTCGGTCTCCATTGCTGATGGTGGCACAGCCTCACCAGCTGATGGAAACCTCCACTCCATAAGAATCCAGACCCGGAAGCTGACGTTCAGAGTGCTCCACAGGGCAGGAATGGCAGGGGTCAGGCCTGCCCTAAAGACTGAGGCCAGCCTAGCCCAGCAACTCACAGAAGCTAAACTCTGCCATCTGCCCAGAGCCGCTGTGTAGGCCAGCCTGGTCATGTTAGCATCTGGTTTGCATTTTAACTGACCGTGACTGTCTGCTGGACCAGCCAGCATGCCCTGTCCCAGAGTGATAGATGCCATCAGTAATGGGGTCATAGTGGCTGTAATTATCTGGGCCCTTGCTGTGTACCAGGCCTGCATTATTTTTTCCTCTCAGAAAAAGCCATACAGTGAGACATCCACTTAACAAAAGGAGAGACTGAGGCACAGCATTACAGCTGGCTCGTGGTGAAACCCACACTGAGAAACCAGAAAGCAGATGATCTTGTTTGCCCCAGTGAAGCCCTAGGCCTTACTTGGGAAGGTTACCTGATCCCCCTTACCTCGGTTTCCTTATCCACAGCATGAGCGTAAGAATAGAACCCCCAGTTCCCCAGTGATGCCAGGATTCTTTGAGGGCTACATGAATTCACGTACCTAAAGCCCGCAGAGCTGAACTTGTTCGTCGAGGCATGAGGTCATTGTACACTATTATTTACAGAGTATTCTTCTATCTGCTATGTCACTTGGTCGTCTGCCACGTGGCACTGTGCCTAGTTGGCAGGCAGTGAAACCGGGCTTAGCCTGAAGTGGCTGTAATCTTGAGTATCCTGTGCTCTCCCCTCAG
Seq C2 exon
GAACCAGTGATGACCTGCACCAGGACTCAGAGGGGCAAGAGGGCGCCGAGGCTGTGGAGGAGCACCAGTTCTCAGACCTGGAGGACTCTGACTCAGACTCAGACCTGGATGAAGATGAGGAGGAGGAAGAGGAGGAGGAAGAGAGCCAGGATGAGCTGTCTGGGCCATGCTCGGAGGCAGCTCCGCCTTGCCTGCCCCCCACACTACAGGAGAACTCCTCACCCGTTGAGGGCCCTCAGGCTCCAGATAGCACTTCTGACGAGGTCCCGCAAGGCAGCTCCATCTCAGAAGCCACGCATTTGACCGCCAGCAGTTGTTCCACACCTAGCCGGGGTACCCAAGGCCTTCCCAGGCTGGGACTGGCCCCACTGGAGAAGGACATGAGCTCAGCCCCGAGTCCCAAGGCCACGTCCCCTAGGAGGCCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCGCCCCTCACTCACTCGCAAACATTCACTCACCAAAAATGACTCGTCTCCCCAGCAATGTTCACCGGCCCGAGAAGCTCAGGCCTCAGTAACGAGCACACCTGGTCCCCAGATGGGCCCAGGAAGGGACCTGGGCCCTCACCTTTGTGGGTCTCCAAGACTGGAGCTGTCCTGTCTCACTCCCTACCCCATAGGAAGAGAAGCGCCCGCTGGACTCGAGCGTGCCACAGACACAGGCACCCCCAGATATTCACCCACCAGGAGATGGTCTCTGGGTCAGGCCGAGTCACCGCCACAGACAGTGCTGCCAGGGAAATGGGCCCTGGCTGGGCCCTGCAGCCCCTCAGCGGACAAGAGTGGCCTGGGCTTGGGGCCGGTTCCACGGGCCCTCCTCCAGCCCGTGCCTCTACCTCACACACTTCTCAGCAGAAGCCCTGAAACGTGCACCTCTGCATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000078582-Hivep3:NM_010657:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: