HsaINT0076337 @ hg19
Intron Retention
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:13561]
Coordinates
chr1:41978487-41984159:-
Coord C1 exon
chr1:41984073-41984159
Coord A exon
chr1:41979422-41984072
Coord C2 exon
chr1:41978487-41979421
Length
4651 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTTCTGTGTTTGCCCTCAGGAA
3' ss Score
12.19
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCACATGAAGTCGAAGGCCCACAGCAAAAAGTGCCAAGAGACAGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
Seq A exon
GTAACAATTGCCAACCTTCTCCGTCCCCTTTCCCCTTGTCCGCTTTCCCTATCCTCCTCCACCTTTCCTGCTTGCCTTCCCTGCTTCCTTTCTGTCTGCTTTGCCCCATTCCCCCTCCTCCCCTCTCTCCCTCCAATAGCTTCACCTTCAGTTCTCCCAAGTATCAGACAAAGGTTAAATTCCCTGAATGATCGAGCCACCTCCCCACATGCTGATAGGATATGCTCTGCAGCCCTAGCTATCATGCATTACCATCTGCCATGCAGGTGGAGCGCCTGGCACCCATGGGTGCTCAGTGAATGTTTACTGAATAAATGCACACAAGAGAACTTACAGCCAACGTTGATTGAGTGCCCACTATGTGTCAGGCGGGTTCTAAATGCATGCCCTGAATTATCCCAGCCAACCCCTCATAGTGACACTGTGGGACACATACTCTCCGAAGCTCCACACCCACACTCCTGCCTACACACTCTGGCATGGGCCTGACACATGGGCCTTTTGGAGCTAGGAGAGTTTCAAAAAAGCCCAAACCAGACCTGACAGCCGCTTGTCACCTCCCAGCCCCATCCCCGTACACACCCCGGCCATGGTGGTCAATCCCCAGGAGGCATCTTAGAGTCAGTCTCTGAGAAGACAGGGCAGAGGAGTCGAAGCCAGTGGGTCTGGCTGAGCACTGCCCAGCCTCAGCAGTCAGGCAGGTGGCCAGAGGGGCTTTGGTGGTGGACGGCAGTCCCTCCAACAGAAGGAGGCTGGAGCCATCTCGCCAGCACCAAGCAAAGCAGGAAGCATACTGATTCCCTGAAATCAGCCCCAGGACTTAGAGTGTGACAGAGAGGAGTGTGTATGCACGCACTGTGTGTCTTGTTCTGTTTTTGTTTTTCCAATTTGGGGATGTATTTGTGGTCTTACAAAAAAGAGTTAAGTCATATTTCCTTTTAGGTGGAATAAGTCATTTTTATAGAGGAGAACACAGTGAACTTGGGGCTGTTCCCCCCCAAAGCTAGAATGGGGTTCACTATGCTTGTCAAGGATACACTGGGCCATATGCACATGTTGTCTCATTGAGTCCTCAAAACAGGTGGCAGAAACTTGTGTCACTCATGTTAAGTCAGGGAAGTCAAAGCTCAGACAGGTAAAAATAGCCCAAGGTCACACAAAAACCCTGGCTGCATGCCAGTCCACTGCCTGGTGGGCTGGACCAGGGGAGCCTGAACCTAAGCCAGAGCCCTCCCCTGAGGTCCCTGCCCTGCCCCAGCCTCATTTTCCCAGTGGAGCAAACGAGGATGCTCAGAGCCACTTTTCGGAGGACGAAATCCATGCATTCATTCCAGAAGTAATTACTGGGCACAGTCTCTGTGCCTGGCTCTGTTCTGGGTGCTGGGGGTTCCGCAATAAATAAAACAGCTCCTGCCCTCAGGCAGTCGGCATGGCAGGGGAGCTGGGCAAGGAACGATGGTGGAGTAGAGCAGGGGCCCTGCCTGTGAAGCCAAAGAGAAAGCAGAAGAGCCAAGTGAGGGCTGGGGCCCGTGGGGAGGGCCGCTGTGCTAGACAGGGCGGTGTGAGCAGAGAACCCACCCGGAGGAACCGGGGTCAGGAGCCACGTGGGGTCAGGGAGGAGCTCTCCTGCAGAGGGAGCAGCAGGTGTGGGGTCCCCGGGGGCCACGGCGCTTGGCCCGCGTGCTGGAGCCCGCTGGACGCGGGGGCAGCCGGTTCAGAGAGAGCTAGAGCCTGAGGGCTGAAGGGCATGGGGGGGTGCCCTGGAGCGGAGGAGAGAGGCAGGGCGTCCTCTGGCCTGTGCCGTGGGCGCGGGGAGCACGGGTGTGCTCAGGAGGTGGAAAAGCGGCGGGATTCTGGGGAGGTTCCGGAGGGAGAGCCCACAGGCTCAGATGACCCCATATGGGGCAGAAGAGAGGGGGAAGAACGAAAAGGAGCCATGGAGGACTCCAAGGATTACGGCCCAAGAGACTGAAGGATGGAGTTTCCACTTCCCGCGACGAGACAGATGCCGGGGGGAGCGGCAGGAGTTCGTGTCTGTGGGACGCGAGGTGGCGCGTGGGAGAACTGCCTGGAAGGAGCCAGGCGCCCCGGCCCTGCCCATGGTGCTGGCCAGGCTGGGCGCTAGCGCCACCGTGTGGCCTCTCCCAGCGGCGCCCGCCGCGCGCTCAAGCTCTCTCATTTGTGGAGCGTTGGCCTGGATCCCAGCAGGGGCGGGGCCGCCCAGCCAGGGGCATTCCCTCAGCGCCCTGCAGGAACGCAGATGTGGAGGCCCCGGCCAGCCCCGAGCTGGGCAGGGGACTCTTGGCTTCCAGCATTCATGCACTGAGTGCCCAGGACGGGCCATTACCCCCACTGGGTCTCAACTTCCACATTAGTAAAGAGGATCTTTAGGAGCCCTCCCTGCTGGACATCAGGAGACGCTGGTCCTGACTCTCCTTCACTCCTAACACTACCCCTGTGACCTTCATCTGCAAAATGCTGACAATCCCACCCCAGCTACCTGCCTGCTGAGACTGGGGGGACAGGGTATCATGGGATGACAGGAGCTGAAGTTTATTGGGTACTTACTGTGTGCCAGACCCTCACAGTCCTCTGAACAGCTTCCTAGAGTGCTTTTATTGCTACCCAGTTTACAGATGAGGAAACCAGACACACAGAAAGTAAAGTATCCAACGTCACACAGCAAGGAAGTGGTAGTGCTGAGATTCAAACCCGACCATTCCCTGCTTCTTAGTGCAGCACATCATTTTTAAACTGTCAGCGTAATAATGCAAGGGCTGTAAACCTTAGTTCTGACTCAGCCACCAGCTCTCACTGGGTCATCTGTGCCTGGATTTTGCTGTATGTAAATGAGGGGCAGGGCCAGGTGAACAGGTGTTGAATTAGGCCCCTCCCAAAGTCCTAGGCAAGGGAGGTAAATGCCTGGGGCATAACTACAAAGTTCACCCCCATCCCCAGCCCTGCTCTCATCCTAATCCTTCATTCCTCCTCTGGTCTCATCACCCTGCCTCTAGCCTCAGGGGCCTCCTTTTGCCTGCCAGCCCCAGCTCCACCCCATAGCTTTTGACCTACATCCGGCTGAATGCCCACTTTTGTCCACTTTGGACATCTGACTGCTGCATATTGAGTGACTTGGAAGTGCTAGTTCCGGGCTTTCTGGCCCCGGGGCAGCTGGGCATGGTTGAGAGCCAAAGCCTAGCTGCCCCAGCGGCCTGAGTCAGTTTCTGTGCCAGCCCTCCTGGTCAGGTGGGTGCAGTACTGATATGTGTGAGCGATGGGGCTGGCTGGCCAGCTCAACCCACCTGTCAGCAACCTCACTCTGCAGACCAGAAACAGGTTCCAATGGTCTAGTGATGGGCCAGCGAACAGGCCAGATGTTAGCGGAGCTCTCCCCAGCATCCGGATTGCTGTCCATTTCAGAGATGCCCAAACTAGACTCCTGACATGTTAGAGGTGACCCGACTGGTTGGGGTCATCCCAGAGGAATCAGACCAGGAGGCTAGTATTCCAGAGCCCTAACCCCCACTTTTAGACTCTATTCAATAACTCTGTCATTATTCTTATAGTCTGTTTAAGGAGTGCAAGTGACCTAAATGTCCAACAATATCTGAAACAAGTATCACAATTTTGTTTTTTGTTTACTCTTGTGAACAATTGCTTCCAAGTCACTCAACATGCAGCAGTCAGATGTCCAAAGTGGACAAAAGTGGGCATTCAGCCACATGTAGGTCGAAAACTATGGGGTGGAGCTGGGGCTGGCAGGCAATGGGAGGGCCCCGAGGCTAGAGGCAGCCTGGACTTCAAAAGGGCAGTGGCTCCTCAGATAAGAGCGTGGCTGGGATGGGGACCTGCTCTGCAGCCTGAGGCCAGCTTAGTCAAGCCGCCCACAGAGGCCAGAGTCCGCCACCTGCCAGATGCCATTGTGCCAGCCACCGGGAGCCTGGTCACCGTGGCAGATGTGTGTGTACACTGACCACGGATGGCTCTGTGCTGCTGGACCAGCCAGTGTGACTGCCCTGTCCTGGAATAACAGATTTCATCATTAATGTATTAATATGGTAGCTATAATTATTTTTAAGCCCTCAATATGTGCCAGGCCTTCATTTTAGTCCTCCTAGAAAACCTGGTGAGGTGAGACCATCACATTCATTCGACAAAGGGGGAGACCAAGCAGAGCAAGGTGGTAAGTTGCCCATGGTGAAGCCAGCACTGAGATGCTAGTGAAACAAACAAACAAACAAACAAACAAACAAAGACTGTCTTCTTTGCTATGGCTCAATCCCAGCCCTACTGCTGTCTTCCATGGGCAAGTTACTTACTTTCTCTTACCTCAGTTTCCTCATCTGTAACATGAGGATGAGAACAGTACCAGCTTCACAGGATTCTCTGAGGTCTAAATGAATAAATATACCTAAAGCTCTCAGAACTGAACATTGCACATTCTAGGCATAAGGGAATTATTGTTCATTATTATTTACAAAGCGCTCCCATATCTGTTACGTTTCTTGGTTGTCCCAACAATCTTGTGCCCTTGCGATGGCTATTTTGCCCAGTCAGCAGGCAAGGAAACTGGGGCTCAGAGAGGAGCAGCCGTGTGGGCAGTGGGGCCAAGGCCCAACTGTGACCTTGGGTCTTCTGTGTTTGCCCTCAG
Seq C2 exon
GAACCAGTGACGACCTGTTCCAGGACTCGGAAGGACGAGAGGGTTCAGAGGCTGTGGAGGAGCACCAGTTTTCGGACCTGGAGGACTCGGACTCAGACTCAGACCTGGACGAAGACGAGGATGAGGATGAGGAGGAGAGCCAGGATGAGCTGTCCAGACCATCCTCAGAGGCGCCCCCGCCTGGCCCACCACATGCACTGCGGGCAGACTCCTCACCCATCCTGGGCCCTCAGCCCCCAGATGCCCCCGCCTCTGGCACGGAGGCTACACGAGGCAGCTCGGTCTCGGAAGCTGAGCGCCTGACAGCCAGCAGCTGCTCCATGTCCAGCCAGAGCATGCCGGGCCTCCCCTGGCTGGGACCGGCCCCTCTGGGCTCTGTGGAGAAAGACACAGGCTCAGCCTTGAGCTACAAGCCTGTGTCCCCAAGAAGACCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCGTCCACCACTAGCCCGCAAACACTCGCTAACCAAAAACGACTCATCTCCCCAGCGATGCTCCCCGGCCCGAGAACCACAGGCCTCAGCCCCAAGCCCACCTGGCCTGCACGTGGACCCAGGAAGGGGCATGGGCGCTCTCCCTTGTGGGTCTCCAAGACTTCAGCTGTCTCCTCTCACCCTCTGCCCCCTGGGAAGAGAACTGGCCCCTCGAGCACATGTGCTCTCCAAACTCGAGGGTACCACCGACCCAGGCCTCCCCAGATACTCGCCCACCAGGAGATGGTCTCCAGGTCAGGCCGAGTCACCACCACGGTCAGCGCCGCCAGGGAAGTGGGCCTTGGCTGGGCCGGGCAGCCCCTCAGCGGGGGAGCATGGCCCAGGCTTGGGGCTGGACCCACGGGTTCTCTTCCCGCCCGCGCCTCTACCTCACAAGCTCCTCAGCAGAAGCCCAGAGACCTGCGCCTCCCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124-HIVEP3:NM_024503:7
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.952
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)