HsaINT0076337 @ hg38
Intron Retention
Gene
ENSG00000127124 | HIVEP3
Description
human immunodeficiency virus type I enhancer binding protein 3 [Source:HGNC Symbol;Acc:HGNC:13561]
Coordinates
chr1:41512816-41518488:-
Coord C1 exon
chr1:41518402-41518488
Coord A exon
chr1:41513751-41518401
Coord C2 exon
chr1:41512816-41513750
Length
4651 bp
Sequences
Splice sites
5' ss Seq
AAGGTAACA
5' ss Score
8.92
3' ss Seq
TCTTCTGTGTTTGCCCTCAGGAA
3' ss Score
12.19
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCACATGAAGTCGAAGGCCCACAGCAAAAAGTGCCAAGAGACAGGGGTGCTGGAGGAGCTGGAAGCCGAAGAAG
Seq A exon
GTAACAATTGCCAACCTTCTCCGTCCCCTTTCCCCTTGTCCGCTTTCCCTATCCTCCTCCACCTTTCCTGCTTGCCTTCCCTGCTTCCTTTCTGTCTGCTTTGCCCCATTCCCCCTCCTCCCCTCTCTCCCTCCAATAGCTTCACCTTCAGTTCTCCCAAGTATCAGACAAAGGTTAAATTCCCTGAATGATCGAGCCACCTCCCCACATGCTGATAGGATATGCTCTGCAGCCCTAGCTATCATGCATTACCATCTGCCATGCAGGTGGAGCGCCTGGCACCCATGGGTGCTCAGTGAATGTTTACTGAATAAATGCACACAAGAGAACTTACAGCCAACGTTGATTGAGTGCCCACTATGTGTCAGGCGGGTTCTAAATGCATGCCCTGAATTATCCCAGCCAACCCCTCATAGTGACACTGTGGGACACATACTCTCCGAAGCTCCACACCCACACTCCTGCCTACACACTCTGGCATGGGCCTGACACATGGGCCTTTTGGAGCTAGGAGAGTTTCAAAAAAGCCCAAACCAGACCTGACAGCCGCTTGTCACCTCCCAGCCCCATCCCCGTACACACCCCGGCCATGGTGGTCAATCCCCAGGAGGCATCTTAGAGTCAGTCTCTGAGAAGACAGGGCAGAGGAGTCGAAGCCAGTGGGTCTGGCTGAGCACTGCCCAGCCTCAGCAGTCAGGCAGGTGGCCAGAGGGGCTTTGGTGGTGGACGGCAGTCCCTCCAACAGAAGGAGGCTGGAGCCATCTCGCCAGCACCAAGCAAAGCAGGAAGCATACTGATTCCCTGAAATCAGCCCCAGGACTTAGAGTGTGACAGAGAGGAGTGTGTATGCACGCACTGTGTGTCTTGTTCTGTTTTTGTTTTTCCAATTTGGGGATGTATTTGTGGTCTTACAAAAAAGAGTTAAGTCATATTTCCTTTTAGGTGGAATAAGTCATTTTTATAGAGGAGAACACAGTGAACTTGGGGCTGTTCCCCCCCAAAGCTAGAATGGGGTTCACTATGCTTGTCAAGGATACACTGGGCCATATGCACATGTTGTCTCATTGAGTCCTCAAAACAGGTGGCAGAAACTTGTGTCACTCATGTTAAGTCAGGGAAGTCAAAGCTCAGACAGGTAAAAATAGCCCAAGGTCACACAAAAACCCTGGCTGCATGCCAGTCCACTGCCTGGTGGGCTGGACCAGGGGAGCCTGAACCTAAGCCAGAGCCCTCCCCTGAGGTCCCTGCCCTGCCCCAGCCTCATTTTCCCAGTGGAGCAAACGAGGATGCTCAGAGCCACTTTTCGGAGGACGAAATCCATGCATTCATTCCAGAAGTAATTACTGGGCACAGTCTCTGTGCCTGGCTCTGTTCTGGGTGCTGGGGGTTCCGCAATAAATAAAACAGCTCCTGCCCTCAGGCAGTCGGCATGGCAGGGGAGCTGGGCAAGGAACGATGGTGGAGTAGAGCAGGGGCCCTGCCTGTGAAGCCAAAGAGAAAGCAGAAGAGCCAAGTGAGGGCTGGGGCCCGTGGGGAGGGCCGCTGTGCTAGACAGGGCGGTGTGAGCAGAGAACCCACCCGGAGGAACCGGGGTCAGGAGCCACGTGGGGTCAGGGAGGAGCTCTCCTGCAGAGGGAGCAGCAGGTGTGGGGTCCCCGGGGGCCACGGCGCTTGGCCCGCGTGCTGGAGCCCGCTGGACGCGGGGGCAGCCGGTTCAGAGAGAGCTAGAGCCTGAGGGCTGAAGGGCATGGGGGGGTGCCCTGGAGCGGAGGAGAGAGGCAGGGCGTCCTCTGGCCTGTGCCGTGGGCGCGGGGAGCACGGGTGTGCTCAGGAGGTGGAAAAGCGGCGGGATTCTGGGGAGGTTCCGGAGGGAGAGCCCACAGGCTCAGATGACCCCATATGGGGCAGAAGAGAGGGGGAAGAACGAAAAGGAGCCATGGAGGACTCCAAGGATTACGGCCCAAGAGACTGAAGGATGGAGTTTCCACTTCCCGCGACGAGACAGATGCCGGGGGGAGCGGCAGGAGTTCGTGTCTGTGGGACGCGAGGTGGCGCGTGGGAGAACTGCCTGGAAGGAGCCAGGCGCCCCGGCCCTGCCCATGGTGCTGGCCAGGCTGGGCGCTAGCGCCACCGTGTGGCCTCTCCCAGCGGCGCCCGCCGCGCGCTCAAGCTCTCTCATTTGTGGAGCGTTGGCCTGGATCCCAGCAGGGGCGGGGCCGCCCAGCCAGGGGCATTCCCTCAGCGCCCTGCAGGAACGCAGATGTGGAGGCCCCGGCCAGCCCCGAGCTGGGCAGGGGACTCTTGGCTTCCAGCATTCATGCACTGAGTGCCCAGGACGGGCCATTACCCCCACTGGGTCTCAACTTCCACATTAGTAAAGAGGATCTTTAGGAGCCCTCCCTGCTGGACATCAGGAGACGCTGGTCCTGACTCTCCTTCACTCCTAACACTACCCCTGTGACCTTCATCTGCAAAATGCTGACAATCCCACCCCAGCTACCTGCCTGCTGAGACTGGGGGGACAGGGTATCATGGGATGACAGGAGCTGAAGTTTATTGGGTACTTACTGTGTGCCAGACCCTCACAGTCCTCTGAACAGCTTCCTAGAGTGCTTTTATTGCTACCCAGTTTACAGATGAGGAAACCAGACACACAGAAAGTAAAGTATCCAACGTCACACAGCAAGGAAGTGGTAGTGCTGAGATTCAAACCCGACCATTCCCTGCTTCTTAGTGCAGCACATCATTTTTAAACTGTCAGCGTAATAATGCAAGGGCTGTAAACCTTAGTTCTGACTCAGCCACCAGCTCTCACTGGGTCATCTGTGCCTGGATTTTGCTGTATGTAAATGAGGGGCAGGGCCAGGTGAACAGGTGTTGAATTAGGCCCCTCCCAAAGTCCTAGGCAAGGGAGGTAAATGCCTGGGGCATAACTACAAAGTTCACCCCCATCCCCAGCCCTGCTCTCATCCTAATCCTTCATTCCTCCTCTGGTCTCATCACCCTGCCTCTAGCCTCAGGGGCCTCCTTTTGCCTGCCAGCCCCAGCTCCACCCCATAGCTTTTGACCTACATCCGGCTGAATGCCCACTTTTGTCCACTTTGGACATCTGACTGCTGCATATTGAGTGACTTGGAAGTGCTAGTTCCGGGCTTTCTGGCCCCGGGGCAGCTGGGCATGGTTGAGAGCCAAAGCCTAGCTGCCCCAGCGGCCTGAGTCAGTTTCTGTGCCAGCCCTCCTGGTCAGGTGGGTGCAGTACTGATATGTGTGAGCGATGGGGCTGGCTGGCCAGCTCAACCCACCTGTCAGCAACCTCACTCTGCAGACCAGAAACAGGTTCCAATGGTCTAGTGATGGGCCAGCGAACAGGCCAGATGTTAGCGGAGCTCTCCCCAGCATCCGGATTGCTGTCCATTTCAGAGATGCCCAAACTAGACTCCTGACATGTTAGAGGTGACCCGACTGGTTGGGGTCATCCCAGAGGAATCAGACCAGGAGGCTAGTATTCCAGAGCCCTAACCCCCACTTTTAGACTCTATTCAATAACTCTGTCATTATTCTTATAGTCTGTTTAAGGAGTGCAAGTGACCTAAATGTCCAACAATATCTGAAACAAGTATCACAATTTTGTTTTTTGTTTACTCTTGTGAACAATTGCTTCCAAGTCACTCAACATGCAGCAGTCAGATGTCCAAAGTGGACAAAAGTGGGCATTCAGCCACATGTAGGTCGAAAACTATGGGGTGGAGCTGGGGCTGGCAGGCAATGGGAGGGCCCCGAGGCTAGAGGCAGCCTGGACTTCAAAAGGGCAGTGGCTCCTCAGATAAGAGCGTGGCTGGGATGGGGACCTGCTCTGCAGCCTGAGGCCAGCTTAGTCAAGCCGCCCACAGAGGCCAGAGTCCGCCACCTGCCAGATGCCATTGTGCCAGCCACCGGGAGCCTGGTCACCGTGGCAGATGTGTGTGTACACTGACCACGGATGGCTCTGTGCTGCTGGACCAGCCAGTGTGACTGCCCTGTCCTGGAATAACAGATTTCATCATTAATGTATTAATATGGTAGCTATAATTATTTTTAAGCCCTCAATATGTGCCAGGCCTTCATTTTAGTCCTCCTAGAAAACCTGGTGAGGTGAGACCATCACATTCATTCGACAAAGGGGGAGACCAAGCAGAGCAAGGTGGTAAGTTGCCCATGGTGAAGCCAGCACTGAGATGCTAGTGAAACAAACAAACAAACAAACAAACAAACAAAGACTGTCTTCTTTGCTATGGCTCAATCCCAGCCCTACTGCTGTCTTCCATGGGCAAGTTACTTACTTTCTCTTACCTCAGTTTCCTCATCTGTAACATGAGGATGAGAACAGTACCAGCTTCACAGGATTCTCTGAGGTCTAAATGAATAAATATACCTAAAGCTCTCAGAACTGAACATTGCACATTCTAGGCATAAGGGAATTATTGTTCATTATTATTTACAAAGCGCTCCCATATCTGTTACGTTTCTTGGTTGTCCCAACAATCTTGTGCCCTTGCGATGGCTATTTTGCCCAGTCAGCAGGCAAGGAAACTGGGGCTCAGAGAGGAGCAGCCGTGTGGGCAGTGGGGCCAAGGCCCAACTGTGACCTTGGGTCTTCTGTGTTTGCCCTCAG
Seq C2 exon
GAACCAGTGACGACCTGTTCCAGGACTCGGAAGGACGAGAGGGTTCAGAGGCTGTGGAGGAGCACCAGTTTTCGGACCTGGAGGACTCGGACTCAGACTCAGACCTGGACGAAGACGAGGATGAGGATGAGGAGGAGAGCCAGGATGAGCTGTCCAGACCATCCTCAGAGGCGCCCCCGCCTGGCCCACCACATGCACTGCGGGCAGACTCCTCACCCATCCTGGGCCCTCAGCCCCCAGATGCCCCCGCCTCTGGCACGGAGGCTACACGAGGCAGCTCGGTCTCGGAAGCTGAGCGCCTGACAGCCAGCAGCTGCTCCATGTCCAGCCAGAGCATGCCGGGCCTCCCCTGGCTGGGACCGGCCCCTCTGGGCTCTGTGGAGAAAGACACAGGCTCAGCCTTGAGCTACAAGCCTGTGTCCCCAAGAAGACCGTGGTCCCCAAGCAAAGAAGCAGGCAGCCGTCCACCACTAGCCCGCAAACACTCGCTAACCAAAAACGACTCATCTCCCCAGCGATGCTCCCCGGCCCGAGAACCACAGGCCTCAGCCCCAAGCCCACCTGGCCTGCACGTGGACCCAGGAAGGGGCATGGGCGCTCTCCCTTGTGGGTCTCCAAGACTTCAGCTGTCTCCTCTCACCCTCTGCCCCCTGGGAAGAGAACTGGCCCCTCGAGCACATGTGCTCTCCAAACTCGAGGGTACCACCGACCCAGGCCTCCCCAGATACTCGCCCACCAGGAGATGGTCTCCAGGTCAGGCCGAGTCACCACCACGGTCAGCGCCGCCAGGGAAGTGGGCCTTGGCTGGGCCGGGCAGCCCCTCAGCGGGGGAGCATGGCCCAGGCTTGGGGCTGGACCCACGGGTTCTCTTCCCGCCCGCGCCTCTACCTCACAAGCTCCTCAGCAGAAGCCCAGAGACCTGCGCCTCCCCGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000127124:ENST00000372584:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.953
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development