GgaINT0137475 @ galGal3
Intron Retention
Gene
ENSGALG00000000635 | HIVEP3
Description
NA
Coordinates
chr23:887786-894692:+
Coord C1 exon
chr23:887786-887884
Coord A exon
chr23:887885-894364
Coord C2 exon
chr23:894365-894692
Length
6480 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
3' ss Seq
TGTGTTTGTCCGTCTTGCAGGAA
3' ss Score
11.72
Exon sequences
Seq C1 exon
GGAATCTGACTAAGCATATGAAGTCAAAAGCCCACAGCAAAAAATGTCAGGAGATGGGCGTGTTGGTATCTTCACTGGTGGATCTGGAAGCCGAAGAAG
Seq A exon
GTAAAATCCTTTACAGTCATATATGACTTTTGCCTCTGAGAAAGGGTAGTTCCCATTCAAGCAGAAGATGTGGGGTGGTTTTGCTCCTTCCAGCTGTGCATGGGGCTGTAACCTCTCCCTGTGCTGCTGCAAGCATGGCGCTGTGGCTGATGGTTAAGAGATCAGTCCTGGCCCCCTCGTTAGGATCTGGAGCTGCAGTGCTAAGTGTGAGCAGATGCTCATGCTGCTGCCCTGATGGTTCTGCTAAGGAGATGCCCCTCTGCAATATGGAAAGGAGCTCCAGGGAATGATGTTTCCATCAGGATCATCTTGGAATGATAGAACATTAAGGTTGGAAAAGACCACTGAGATCATCTAGTCCAACCCATTACCACCATGCCCACTAAACCCTGTTCCCGAGTGCCACATCTTCCAATAACCTGCCCATCTGACTGGATGGATGACCTCAAAACACTCCAAATAACCAGTGCAGACCCAGGGGACTCTGACTGACTGGAGCAAACCTGGGCAGTGTCTGGATGCTACTGCGTGCATCAATAAACCAGGATGGGGACAGCTGCTTATCTCATCCCCAGGTCATTGCCATGTGTAGGATAAAGGTGAGCCACTCTAAAATGACTTGGACGTTTCTCAGCAGAGAAAAGAGCTGGCAGAACCAAAATAGCATGATGCTTTGACATTTGCCGGCATTATTCTGAATGCTTTACAAGATACATTTACCCTGACTCACCTGCTCATTTCTTTCATCTGCTTCTGAGTGAACACAAAGTCTGTCCAAGGGTCTCTAACCCAGGAGCCTGCCTGTGCCATGAGAAGCACACGTGATTCTCTCATTTAGTAATTTCTGCCCAGGATTACACTGGGATGTGCAGCTGAATTCCCCTGAACTCATCCCAAAATGCAGCCCTGCAGGGAGGCTGGCCAACACTGGGCAGGAGCGAGGTGGCCATGAGCACTTCTGCCTCGTTGAGAAGCATTGAAGGAAAGCTGAGGAAGGTCTCCAGAAGAACATGGGGAAGTCTCATGTGTCTGAGCCAGAAAAACAACTTTTTTACTCCGATTATTGGAGGCTGTGGTCATACAGCTGCAAAAGGTCAGGCTACCCCCATTCTTTCCCTCCCATCTCACCCCAAATCATTCAGGTATCCCAGTCCCTGGGATCTGCTCTGCCGCCTCCCGACAACGGGTTAACAGGAGCTCCATAAGGCACGCAGCACCACGGTTATTTTTATAAAGTGAGCATCAGCTGAGCGAGTTCTGGAGACGGTGCTGGGAGCCAGGGAATGTTAACTCGGCAGGAACAACAAACAGCGCTTATCACCCCGCTCCCCTGCCGAGGTCGAGTCCATCCGAAGCTTTGTTGGGAAAGGGGCTGGTTCCTGGGATGTGGCACTGCCACACGCCTCCTCATTTGTGGGTAATTAAAAGTCATTAAGTGAGGTCCTGCAGTGGGAACTGTGTTGGCCCATGTGCTTTGTCCCCAGGTTGGTTCATTAAGCAGTCTTGGGGCCGTTTGCATGCAGTCATCCCAAAGTAAGCTGCAGGTCCCCGGACGACCCCAGTTCAGGCCATCTGTGCACCTCCCAAAAACTATCAAAGCAATGGCATCAGGGTGGCACCCTCAGCTCACCAGCCAGGATCTGGGGCTGGCACAGCACAGTTACACCAGCCCAAGCCCCCATGGGCTCCTGGTGTAGCAGCACTGCACCCTCAGGTCTGATTCGGGCTGGATGCAGTCCTGGGTGGCCAGGGGATGAGGATGTGGGGGAAACAAAGTGCCCTATTACACTTCCACTGGCATTTCCAGAGACTCCCATAGTGCCTTTCCCATCTTCTGTATCTCCTTTGCCCCCCGTTTACCTTCTTAAAGCTATCTCATTCATGCAGCCAACAGCATGCTGCCATGCTTCAAGGGGTGGTTCCCTTCCTGTTGAAATTTCCAGGCTCTTGGCTTTGACCCAACTCTTTGGTGCAACCTTTTGGCCGGACTGAGACACACTGTGCTTAGCTGTGGCCTTTCTGCAGGAAGACATGGCCAAAAGGGAACCTGGCTGGGGATTCCATGGAAGCTGTCCTAAAGGAGAGCTTTTTGTCCTCCACGACCCCCAGGCCCTTCTCTGCAGGGCTGCTCTCAGTGAGTTCTTCTCCCAGTTCCTTTCCCAGTTCACAGAATCATAGAATGGCTTGAGTTGGAAGGGACCTCAAAGATCATTTGGTTCTAATACGTTTCCAAATTCTCCCGTTCTTCCAAATTCTTTTCCCAGTTCTTCCAGTTCTTCTCCCATCCAGGTAGGGAAAGAGAAAAGAGGCTCCTGAAGTGTAGGAAAAAGGAAAAAGTCTTTTACAGTGAGGGTGGTGAGGCACTGGAACAGGTTGCCCAGAGATGTAGTGGATGCCCCATCACTGAAGGCTAGATCAGATCCTGGGCAACCTCATGGAGCTGTGTGTATCCATATTCATTGCAGGGGAGTTGGACTAGATGACTTTTAAAGGTCCCTTCCAACTCTAAGGATTCTTTGATTCTATGATTCTAAGTGTTGATTGTGTGAGCCTGAAAAGCAGCTGTTATTTTAAACCTTTCCATTATAGTCAATTAGAACTAATGAATCAATCACTGGAGCGTCACTTTTGAAAACCTGCAGATCAGAAGTCCTATTTCAGTTGTGAGGACAGAGCTGTAGGGGCTCACTGTGCGAGTTGGGGGATGCTTTGTTCCTCATTTCCTTCAGCCATTCCCCCCAGGCTCACCAAGGGACAATGGCATATAGGGTCAGATGAGGAGGATGCTCTCAGCCTTCGGCCTCACTCATAGAAAAGAGATGTAAAGCTGAGAGCTCAACAAAGGCTGGAACCATCTGCTTGAGGATGTGATTTTTTGGCCCTCATCAAATCACTGGTCCCCAGTGGCACATGGATACCAACAAGGAGAGATCCTGTGGAGGGACGGGAGCCCACGAGCTCCAGGACAGGGCTCCTTGCCTTGTTGCTGTTGGCTGCACAGCAGCTTGCTGGAATGCATTGCACTGTCTGGACTTCATTGCATTATGCAAGAAACCCGCATAATTTTAGAATTACAAAAATATACAGTCCCCGTTTCCTCCCATTGATGGAGACCATTCGTGTTTGTGTAAAGGGGACCATCTGCCAGGAAGGAATGCAGAAAGGTGAAAGCAGAAGGCACAGTGTCAGCGGAGCGTTTCCATTCTCTCCTCCCATCTTCTTTCTCACCTGATTTAATCTAACGCCGAACCCTTGCTGAAATTTCAAATATTCGGGAGGCCCTTTGCTCACAAATGCCAAGCAAATCCTAAATAAAACAGCTGAGAGGAAAGTCAGAAAATCATGTTTGGTACTGTAATTGTTGGAGGTGTGTGGATGGATGAGAAAAGAGCAGAGGGATGACAGAGCAGCGAGTGAGGAATCGGAGATTGCAGCTGCGTTGCAGTGTGGTGGGTTGGAGATCGCCTTCCCATGTGGGCTCAGAGCAGAGCCTGCTGCTGAGGAGTTTAATTAAAAAAGTAAAAATGTGCCACAGCCCAGCCCAGGAACGAGTGCTGTGCTCCCCTCTGGGGGCATGCGGGGAGGGAACAGCCGTCCCTGCAGCTCCCTGGATTATTTTCAGCTTGAGCCGTATTTCACTTGATTGTTTTGCTTTCTATTTAAGGGGCAGGGGAAAGAAGGGGGTGTGACTATAAAAGGAGATTGGAGCATAATTCTTCACTGTTGCATTGGTTTGGCTTGGTGTGACCGCACCAGATTTGTGCAATACCGCGAGGGTAACGCAGATGTAATGAAACAGCATGCAGAGCCCTCCATGCCATCAGTGGGGCAGTTTTTCCCTCCCTCTCTGTGCTCTCCTGATGTGCCCTTGCTCTCCCTAGCCGTTCAGCAGGATGTTTTTCTGCTGCAGAAATCCATGTCTGAGCTCTCTATGGAGCCTGCGATGATCCCGCAGCACCGTCCCTTTGGGATGCCCCATGGCTCTCTGAGCTGTTTCCCCCCTGTGGGAAATGCAAACAACACCCCAGCGCAGAGCTGGCTTCGCGTTTCCCTCAGCCTGTCCTTCTGACCTTGCTGTCTGCTCAACTGAGGCCAAAACAAGGAGACCACACAGGAGACGGCAGCAGGGCTGGGGCTGTCCATCCCCATGCCTGTGGATGTCGACCCCACAGACCAGGACAGTGATAGCTCATAGCTCTGGTACTGAGCTGCCTTCCCTTTACAGGCAAGAAGTATGCATGGGAGGATGAACCTTTTTGGAATAATATTTGTTCTGAAGTCAGCTCCTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCCCTGTACAGGCAAGAAGTATGCACGGGAGAATGAGCCTTTTTGGAATAATATTTGTTCTGAAGTCAGCTCCTCTGGGAGTTTGCACATAGCCCAGCGCTGGATCCTGGGCCCAGCAAACCCCATCGTTATACAAGCATTGCACAATGCTCTTGGTGGAGAGCTGCTAAATGCATGTCTTGTTCCACTGATATCTGAGGGTTGCCAAATACTTTGTGAGCATTTACCAGTAAGGCCCTGTTATTCAAAGTAAGCTGAATTAGGCATTTATCCACAGATCTGAGGGACTTCTCCCTGTGTGGCCGTGTTCCTCCTGCAAGCCACCAGGTGTGGTCCAGCTCTGCGCTGATTCCCTGGAGCCTCCCCTTGGCTCGTTCTGCTCATGGCAGCCCTACATGGAAAACTTCAGTTTGGAGGAGAGCAGCATCTTATGCTGAAGAGGGGGAGGGGAGGGGAGGGGGAAGATAAGAAGCCAGAAGTGCTGCAATTAGTGCAAGTGTCAAAGCAACATTTCCCTTGCACAGCTGGGAAGCAAGCATGCCTCAGCAGCACAGCACCCATCTTCTTGGTGCCTGGCGTTAGCACGGTTTGAGAAAGTGGTGTTTTATGGGCCCCTCCAGAGCAGTGGGGACTTGTGGAAAGCCTCTATCAGTGCCATTTTGTTGAGCTATAGTGACATCCAGTGGCTGTTCCCAGTGGACCTTTGCAGGCTGAGTTTTGCTTTATCCAGCCCTGCTGCACATCTGGCATGGGAAATGCAGGTTTTCTCTGTGCAGTGCAGAGGGTGAGCCAGCAGCTTGGTATTGATCTCATAAAGCTTCTCCTGGCTCTTTGAGTAGAAGAGATCTACTCTATGGGCTATGGGATACTCTATGGGATACTCTATTTTAAATTCTTCACAATTTGTTTTCTTAAATATTCCATGGTTTACAATCTCTTATTACCAAAGCATCCCAAACATGTCTGCACTATAGCTAGATTTGACCAAAATAAGGGGAAAACCACCGAGATTCTTTCTTTTTTAATTAAAGCCCTGTCTTGCTAATATTTAAATGTCATATAATTTAGACAGGACAGGCCTGACATGTTGGCTACCTGCGTTTTGGCAGCTCTAGAAGTTTTGTGGGGACCACTACAACAAACAGTGGTAAAAAGCACATCAAAGGATGATGGTGCTGCTGATCTCCATGTCTAGTAAGACCTTTCTTAGTGTTCCTGAAGGAGCAGAGGCTGTGTGATGGTGTACAGCAGTAGCAGGGGCTGATGGCAGAGTGCTGGCAGAGCAATGGTTGGAACGAAAATTTGAGCAAAGCAGTGGTGGGATTCCAATGGTGGGATTTGTGGGTTCAAGGCAATGAAACCACCAGGGGGAGAGCTGGAACAGAGGACAAGGCTGAAGTATGAGGCAACTAATCTAGGAAATAACTGGGTCTTCCTTCCTCTTGTCCCGTGAGATCTTTGGAGCAGGTTTAGCACAAACCCATCCTCTGTTTGTGTCTTACACTTCTTGTTTTGTGTTTGTCCGTCTTGCAG
Seq C2 exon
GAACCAGTGAAGACCTATTCCAGGACTCTGAGGGGCGGGAGGGATCTGAGCCTATTGAGGAACACCAGTTTTCAGACCTAGAGGAATCTGATGATGATGATGACAACGAGGATGATGAAGACGAGGAGGAAGAGGAGAGCCAAGATGAACCACCTTTAAAGCTGCCGGAAGCCAAACACCCCACCCCACTGATGCACTCTTCAGGTGGCTCTCCGACTTCTCAAGAGGAAGGCACAGAAACAGCATCGTCCTTAGCCCAAGAAACTGCTTCCAGCAGCCAGAAAGTCGGTGAAGGCCAGCAGGGCTCCTCCTGTGGGCTGGAAACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000635:ENSGALT00000000902:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.412 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF065247=NOA36=FE(21.7=100),PF053276=RRN3=FE(20.8=100)
A:
NA
C2:
PF065247=NOA36=PD(39.5=54.5),PF053276=RRN3=PD(60.4=87.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]