GgaINT0137498 @ galGal3
Intron Retention
Description
NA
Coordinates
chr23:4675491-4676079:-
Coord C1 exon
chr23:4675985-4676079
Coord A exon
chr23:4675663-4675984
Coord C2 exon
chr23:4675491-4675662
Length
322 bp
Sequences
Splice sites
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
3' ss Seq
CTTTGTTTGTTTTCCTACAGGGA
3' ss Score
11.75
Exon sequences
Seq C1 exon
ACTCATTTGACCCTCTCAGTAAGGGACTGGGTTTGCATTCACGTTCACGAGCAAGACGGAGGCACAGAGATGGCTTCCCCCAGCCAAAGAGACGG
Seq A exon
GTAAGAAAGTCCTCTAGAATGTTAATTCCTTGCATTTACAGTAATAATGTTGGATGAATCCTTGGAAGTAAAAAAACTATTGATCCAGGGTGGAAATGAGAATTCGATTTAGCTACACTGTATTTTTTCCTGTTCTTCATGATAAATATTTTCTTCTCTGCATGTTAAAAAATGTGTATGTATACTTTCAGCTTCTACCATGGAAATAGCCTTTTGTTATCGTGTCAGTTTACTGCTCTCTTTATATGAGGTGAAGTGAAGCATCCATAGATGAAGTGCTTATTAAGCTTTTATTTGCTTTACTTTGTTTGTTTTCCTACAG
Seq C2 exon
GGACGAAAGAAGTCTGTAGTTGCTGTAGAGCCCCGCAATCTGATGCAGGGCTCCTACCCAGGATGCTCTGTTTCTGGGATGACCCTAAAGTATATGTATGGGGTAAATGCCTGGAAGAACTGGGTCCAATGGAAAAATGCACAGGAGGAGCAAGGGGACCTGAAGTTTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002499:ENSGALT00000003937:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.844 A=NA C2=0.138
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATTTGACCCTCTCAGTAAGGGA
R:
TGAAAACTTCAGGTCCCCTTGC
Band lengths:
264-586
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]