GgaINT0137838 @ galGal4
Intron Retention
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E1C245]
Coordinates
chr23:5328069-5328611:+
Coord C1 exon
chr23:5328069-5328223
Coord A exon
chr23:5328224-5328334
Coord C2 exon
chr23:5328335-5328611
Length
111 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
ACTCCTCGGTTGCTCCTCAGGAT
3' ss Score
8.64
Exon sequences
Seq C1 exon
GATGCTGCCCACCTGGAGGCCGGCCAGCCGGTGCAGTACGAGGCCGACGTCGTGGTGTACCTGCAGGAGTGCGAGGGGCTGATCCGCCAGCTGCAGGTGGACGTGCAGATCCTCCGGGACGAGAATTACTACCAGCTGGAGGAGCTGGCGTTCAG
Seq A exon
GTGAGTGGGGCTGTGTTGGGAGGCAGGCTCTGGGAGCCTCCCTGCTCCTCCTGCGTGCCAGGAGGCAGTACAGCATCAGCCTCATCTGCTCACTCCTCGGTTGCTCCTCAG
Seq C2 exon
GATCATGCGGCTGCAGGATGAGCTGGTGACGCTGAGGCTCGAGTGCACCAACCTGTACAGAAAGGGCCACTTCTCCACACTGGAGCTGGCGCCCGCACCCACCCTGAGCACCACTCAGCTGAAGGGCGAGTCCCTGACCAAAGGGCTGCACACCTCATCCGCCTCCTGGTTCAGGAAGCCCATGACCAGGACAGAGCTGGTGGCCATCTCCTCCTCTGAGGACGAAGGCAGCCTGCGCTTCGTGTATGAGCTGCTGGCCTGGGTGGAGGAGATGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.054
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0043516=Spectrin=PU(13.7=14.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGTGGACGTGCAGATCCTC
R:
GTCATGGGCTTCCTGAACCAG
Band lengths:
247-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]