GgaINT0137855 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5651820-5652194:+
Coord C1 exon
chr23:5651820-5651903
Coord A exon
chr23:5651904-5652086
Coord C2 exon
chr23:5652087-5652194
Length
183 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGG
5' ss Score
10.51
3' ss Seq
CCCCCCGGCTGTGTTGGCAGGAC
3' ss Score
6.86
Exon sequences
Seq C1 exon
GCTTTGGCTGCAGAAATCGAGAAGAATCAAGCCAAGCTGGACCAGTGTCAGAAGTTCTCCCAGCAGTACTCAGCTGCTGTCAAG
Seq A exon
GTAAGGGCCCTTCCTAAACCTGGGGCGCAGCGACAGTTTGCACTTCGCCTGCTCTGAACCTCCTGGTTAGCAGAGAGGTGACCATGCGTGCAAGCAGGCAGCAGGAGCTGGAGCTCCGGGGGTGCCGGTATGAAAGAAGGGGCTGCAGTGTCCTTCTCCCCCCCCCCCCGGCTGTGTTGGCAG
Seq C2 exon
GACTATGAGCTGCAGCTCATGACGTACCGCGCATTTGTGGAGTCGCAGCAGAAGTCCCCCATGAAGCGCCGGCGGATGCTGTCCTCCTCGGATGCCATCACACAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:30
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.250
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTTGGCTGCAGAAATCGAG
R:
TGTGTGATGGCATCCGAGGAG
Band lengths:
188-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]