GgaINT0137881 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5694221-5695112:+
Coord C1 exon
chr23:5694221-5694380
Coord A exon
chr23:5694381-5694785
Coord C2 exon
chr23:5694786-5695112
Length
405 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TTTGTCGCCCCGGCTTTCAGGCT
3' ss Score
7.83
Exon sequences
Seq C1 exon
GCAGAAGCAGCTGGAGGACATCCTGGTGCTGGCAAAGCAGTTCCATGAGACCACAGAGCCTGTGTCAGACTGGCTGTCTGTGACGGAGAAGAAGTTGGCCAACTCGGAGCCCATCGGCACACAGACTGCCAAGATCCAGCAGCAGATCAGCCGGCACAAG
Seq A exon
GTGGGGCCGGGGGGTTCTGGGGGGGTTGGGGCTCTGTGGGTGTCTGCTGTGGTGAGGTGGGTGTCGGTGCCAGCGATCCTTGGAGGTGGCCAGAGGGGCCCTGCAGGTGCTGCACCTCCAAAGGCTGCAGGCGCCAGCCCTGCGGACAGCGTTCAGCAGAAGCCTTTGCACCGTGCAATGAGGCGTCTGCTCCTGCATAGAAGAGCCGTCCTCATCTTCATGTTTCTGTTCAGCATTGTTTTTTAATACACCTTGCCCATTTGCGGGTGGGTTTTGCATCACGTTCGTTCCTTCCGTTGCATTTGCCATTTCTGTTCTGCTTTTGTTTTATCTTTTCTTTTTGTTAAATCTCATCTTTTCCGCTCATTTTTATTTTGTTGTCCATTTTGTCGCCCCGGCTTTCAG
Seq C2 exon
GCTCTAGAGGAGGACATTGAGGGCCACGCGGCCGACGTGGCCCACGCGGTGCGTGTCGGGCAGGCGCTGTCCGCCCTGAGCTGCGCCGCCGAGCAGCGGCTGCTGGCAGAGAAGTTGGAGTCTCTGCAGGGCCGTTACGGGGAGGTCCGCGAGCGGTGCTGCCGGAAGGCGGCTCTGCTGGAGCAGGCCCTGTGTAACGCCCGGCTCTTTGGGGAGGAGGAGGTGGAAGTGCTCAACTGGCTGGCTGAGGTCGAGGACAAGCTCGGCTCGGTATCCGTAAAGGATTACAAACGGGACGTCCTGCAGAAGCAGCATGCTGACCAGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:56
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(5.6=11.1),PF0043516=Spectrin=PU(41.1=81.5)
A:
NA
C2:
PF0043516=Spectrin=PD(57.0=56.0),PF0043516=Spectrin=PU(40.6=39.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGACTGCCAAGATCCAGCAG
R:
GCAGGACGTCCCGTTTGTAAT
Band lengths:
343-748
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]