GgaINT0137884 @ galGal3
Intron Retention
Gene
ENSGALG00000003693 | MACF1
Description
NA
Coordinates
chr23:5696667-5697491:+
Coord C1 exon
chr23:5696667-5696908
Coord A exon
chr23:5696909-5697284
Coord C2 exon
chr23:5697285-5697491
Length
376 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGG
5' ss Score
5.87
3' ss Seq
TGGCCGTTCCTTCCTCCCAGGAG
3' ss Score
10.12
Exon sequences
Seq C1 exon
GGGAGGAGGTGCTGCTCATCCAGGAGAAGCTGGATGGGATTAAGACCCGCTACTCGGACATCACTGCCGCCAGCTCCAAGGCGCTGCGCACACTGGAGCAGGCTCGCCAGCTGGCCACCAAGTTCCAGTCCACGCATGAGGAGCTCAATGCCTGGATGAGCAAAGTGGAGGATGAGCTGGCGTCCAGTGGGGGACAGTCCCCAGCCAGCGAGCAGATACCCCAGTTCCAGCAGAGGCAGAAG
Seq A exon
GTGGGGTGCTCAAAGCAGCATGTGGGGATGTGAGAGCCACGTGGGATGAGAGCCAGTAGGGTCTGCTCACTGCCTGGGGGAGGAACGTGGGATACGTGGCCTGGCAGTGTGTTACGAGGGAATGGAAATGGGGGACACTGCTCACACATCTGGAGGAATCGTAGCATCACAGAACGGTTGGGCTGGAAGGGACCTGAGAGCCCCCCCATCTCCTGCCATGGGCTGGTTGCCCCCCACCAGCTCAGGCTGCCCAGCCACAGCCTCGGGCACCTCCAGGGATGGGAGGATCCCAGTCCCCAAACCTCAGGGGGTGCTGGGGGGTGCCCGGTGTCTGGCGTTGCCGCCCTGAAGGGCCGTGGCCGTTCCTTCCTCCCAG
Seq C2 exon
GAGCTGAAGAAGGAGGTGATGGAGCAGCGGCTCGTCCTGGACACGGTGAACGAGGTGAGCCGGGCGCTGCTGGAGCTCGTGCCATGGCGAGCCCGCGAGGGGCTGGACAAGCTCGTCTCCGACACCAACGAGCGGTACAAGCTGGTCAGTGACACCGTCAGGCAGCGGGTGGAGGAGATCGATGCTGCCATTCAGAGGTCCCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003693:ENSGALT00000005857:59
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.333 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(31.1=40.7),PF0043516=Spectrin=PU(41.1=54.3)
A:
NA
C2:
PF0043516=Spectrin=PD(57.0=88.4),PF0043516=Spectrin=PU(3.7=5.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCTACTCGGACATCACTGC
R:
GTCACTGACCAGCTTGTACCG
Band lengths:
348-724
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]