GgaINT0138358 @ galGal4
Intron Retention
Gene
ENSGALG00000007314 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr24:5337677-5339128:-
Coord C1 exon
chr24:5338982-5339128
Coord A exon
chr24:5337962-5338981
Coord C2 exon
chr24:5337677-5337961
Length
1020 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGAGTCGATCTCCTCTCCAAACG
3' ss Score
-2.1
Exon sequences
Seq C1 exon
AAAATAGGTTTTTTATTACTTCTTACGGAGGTTTGTACATATCGGACGTGCAGAAGGAAGATGCCTTGTCCACCTACAGGTGTATCACCAAGCACAAGTACAGTGGGGAGACGCGGCAGAGCAACGGGGCCAGGCTGTCAGTGTCAG
Seq A exon
GTGAGCACGTGGCCCCCGAGCTGTGCCAGGGACGTGCCCAGTCCCATCCGGCCCTGGGGACAGCACCCAGCCTGCGTGCCCCACTCTGAGTGCACCCCTACCCATGTCCCTGGGGGGGGGGAGGGGGTGTGAGGACCACGGGGGGTCCGTGCCGTGCCCCCATGCCCGGCGGTGGGCAGCCGTGCCGTGCAGCACCCCGAGCAGGAGGCGACGGGGCGCGCGGCGATGCGATGTGACAGGCGGCGATGTGAGCAGCCTGACGCGATGTGACGAAGATGCAAGCGATACTGCAGCCGAGCGGCGCAGTCCGTAGTGCCGGCTGGCTCCGGGCGCTCCCGGCTCCGCTCACTGCCCAAATTACTCTGCTCGGGAGCTGCATCGTCTCTCCCGCCCGTCAGCTGCAGCTCGCCCGCGCTCTGCCATATGGTTTTTCCAGCCTTGCGTGCATGGTTCCCGCATTTACTCCTTGAATTAACCCCTGCAAAGGGTTTGGGACAGGGTTGGGAACGGCTGAGATTCCTTGTCCCGGCCCTGTTGGATCCCAGAGCGAAGCGTGGGCAGCCACGGGGCGCCCCGTCCCCTCTCCCCGTGCATTCGATGTGCCTCTGTCCCCTCCTGGTCGCTGTCATTATTTACACGTCACGGCGTTTTACTTCTGCTTGGGAGTAATGAAAGAGGTTTCTTTCCCCTGGAATTTAATTTCACGCCTGAGACTTGGTGATTAATTTTCTCCTTTCCCAGCTGCCTGATGGGCCCCTTTTGCTTGTAAATTTTGAAATGTGCCACAGAATTTGTGTATTTTGCACCAATTAGGTGTCACCTTGAGTAATTCCTACAGTGCTGAGTTTATCCATCCCTCCAGCCGCTCGGGTGAGGCTCCCTGGGGAGATTCCACCGGGTGACGCAGCATTGGCCCACTGCTCCCCTCGTCCCCATCAGCTCAGAGCTCAGCCCTCCACACCGGCGGGGGGCAGGAGCACATCTCTCCTCTTTCTCTGGGTGAGTCGATCTCCTCTCCAA
Seq C2 exon
ACGCAGACCCGGCCGAGTCCATCCCCACCATGCTAGACAGCTTCCAGTCGCGGGAGGTGCGTGCGGGTCGGCTGGTGGAGCTGCCCTGCATCGCTTCGGGATACCCCAACCCTGCCATCCGCTGGCTCAAGGACGGGCGCCCGCTGCCCGCCGACGGCCGCTGGGCCAAACGCATCACGGGGCTGAGCATCGCCGACCTGCGCGTGGAGGACAGCGGGACCTACATCTGCGAGGTGACCAACACCTTCGGGTCCGCAGAGGTCACGGGGACCCTCACGGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007314:ENSGALT00000011835:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.200 A=NA C2=0.010
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=WD(100=89.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGACGTGCAGAAGGAAGATG
R:
TCACCTCGCAGATGTAGGTCC
Band lengths:
342-1362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]