DreINT0060141 @ danRer10
Intron Retention
Gene
ENSDARG00000098057 | dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:ZFIN;Acc:ZDB-GENE-110601-1]
Coordinates
chr15:12189983-12192435:-
Coord C1 exon
chr15:12192289-12192435
Coord A exon
chr15:12190262-12192288
Coord C2 exon
chr15:12189983-12190261
Length
2027 bp
Sequences
Splice sites
5' ss Seq
TGGGTGAGC
5' ss Score
7.23
3' ss Seq
TGTGTTCTCTATGTCCTTAGATC
3' ss Score
11.28
Exon sequences
Seq C1 exon
GTAACAGGTTTTTCCTGACGTCATATGGGGCCCTCTACATATCTGACGTTCAGAAAGAGGATGCCCTCTCTACCTACCGCTGCATCACCAAGCACAAATACAGTGGAGAAACAAGGCAGAGCAATGGGGCCCGTCTTTCTGTTCTGG
Seq A exon
GTGAGCATGCTACATTTGTTACTCTATTTCATGTGCTTCCTATGTGTATATATATATAAGATTTTATGTTTAACCCTCATGTACTGTTCAAATGTACTACCCTTTCGTTGTTTGTGACTGTTTTTTGCACCATTGACTACCATTATAAATTACATTTATTGATTGCATTGATGGACTGAAGCCATGACACCTTATAATTATGTATTCTTGATTATTGGGGATTTTCCCTATTGGGAAGGTAAAATGTGTCATATTTACTGTTGTAAAACTTGCAAAAAAAAAATAAATAGTAAAAAACTTCAGAGCATTTTTCTAAAAAATGTGTCAAAATAGGATTTATCATCAAAAATCATCACATTTGCTGAAACGCAGAGAAAGTTGAGGCCAAATTAAGGCCTAATCCCTATTCCACCCCTTCTACCCCTAGCCCATCCCCTTTACCCCTGCCCCTTGTTTTGGGTGTTCACATAAAGGGGTAGAGGTGTCCCAATTCTCTTTAACTTGAAGACATAGGGCTAATGCTGTGTTCACACCAGATGCAGAACGCGCGGATACATGTGTAAAGAGATGCATGAACATTTTGAGTTTCATAACTTCATTCGCACATCAAATTCACTGAGCAATAGACGCGGATTTGCGTGATGGGCAGGGCTTCTGTCTGCCTGGTGACTCAAGCTTTGTTGCTAAATGGCTAACATGGATTTTATTGAGAGAGTAGCTGTGTTAATTTGCTTAATGGAGGCTGAAAAACAGCGTCGATATGTTTGGAGCCATGTATGAGTCTACTAGATTCTTTTAGAGGTGCACTCAGATCTGTGAGCTCATAAACTCTTCCAGAAACTGTACCTGGATGATGGAGGCTTTCAGCGGTGCTTCTGACTCAGCTGAGCCCAGTTTGATGAACTGTTGTCGGTGTCCTCAGGATTATTTTCCCCTAAGACACCAACAACAGGCACTACATCATAATCACGGCCCCACAAGAGAAAGCTCCGCTAAAGTTCCAATTTTCAAACTCGAGAAATTTACGTGTTAAGTGCATCAATTGCATCAATTGTGCAAAGCACTCAACTTGTGCCGCTTCATTCGCGCGAATCACGTCATTCACGCCGCCTCATTTGCATGCATCGAGCCGCAGGATGTCTATCCACGCCTTTGCATTGACCTAACATGTAAATCACTTATTCCGAGTCTGGTGTGAACACAGCATGAGGGGATGGGCTAGATACCCCTTTAAATGGAGATTTTTCTGGCCTACCCCAAGGGGTAAGAAAATTTCCCAGAATACACCATCTACAATGACATCATGACTTTACACGGAAGTAAGGAGATACACAAATTAGTATTTTATGTTATTATTAAGAATTTTTACAACAAACAAGCATACGTTTCAATACATTCAAAACCGCATTCATGTTTTACTGTCATGGTTTAAAAAAAAACTCTAAAATAAAAACCACTACATTTCGCTATCTTTAATCCCTAATAAAAACTCCTGTATAGAAGTCCCACAACATTCTGTCACTCGATGAATTGGGAATGAGTTGGGAATGATGTTTTTCAGGTGTCTGGTATAATATTAATGCTGTTTTTATGTGTTTACATTTATGAATGCGGTCACGGTAATGCACAGTAAAGTTGTGATCCTATTTTCATATTATATTGTTATGACAACATGATATTGTTGCCTAAATATCAAAAAAATAATGCAACTGGAAAAACATCAACAGTCGCGATTGTCTGATCTCAAACGAAGCATGAGATCGCGATGACATATGATGACGTGTGCAGGTGTTGTAGTGCTGTCCTATTTCTTAGAGGTAAATTTTAAAGCCCTTCCCTTTTACACATTTCAAGGGCCAAGGGGAAGGGGTAGGGGTACAAAAATAGACCCAAAAATCACACCAGAGTGGATAAAAACATCCCCAACACCACACAAGGGTTAAGAATTATGTTTGTAAATGACCAGACTTGTTATGGCTGGCTATAATTGTTTAGTCTTTTTCTAAGTGTGTTCTCTATGTCCTTAG
Seq C2 exon
ATCCCACTGAGTCCACGCCTTCTGTGATGGATAGTTTCCAGTCAGGAGAGGTACAAGTGGGACGCAGCATAGAGTTGCCCTGCATTGCATCCGGTTACCCCAATCCCACCATCCGTTGGCTAAAAGATGGGAGGCCACTTCCTGCAGATTCCCGCTGGACACGGCGACTGACTGGCCTAACAATCAGTGACCTCCGCCTAGAGGACTCTGGAAACTACATCTGTGAAGTCACCAACAGCTTTGGCTCCAAAGAGGTCACAGGACACCTTAATGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098057:ENSDART00000165159:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.160 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(50.0=94.0)
A:
NA
C2:
PF0767911=I-set=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]