MmuINT0053402 @ mm9
Intron Retention
Gene
ENSMUSG00000032087 | Dscaml1
Description
Down syndrome cell adhesion molecule like 1 [Source:MGI Symbol;Acc:MGI:2150309]
Coordinates
chr9:45469216-45476350:+
Coord C1 exon
chr9:45469216-45469362
Coord A exon
chr9:45469363-45476071
Coord C2 exon
chr9:45476072-45476350
Length
6709 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
CTGACCCTCTGTTTTTCCAGACC
3' ss Score
10.29
Exon sequences
Seq C1 exon
AAAACAGGTTTTTCATCACATCACATGGTGGACTGTACATCTCGGACGTGCAGAAGGAAGATGCTCTCTCCACCTACCGCTGCATCACCCAGCACAAATACAGTGGGGAGACTCGTCAGAGCAACGGAGCTCGGCTCTCTGTGACAG
Seq A exon
GTAGGCGTTTGCCCAGGGTGCTGGCCCTCCATGGATATGGGATGCCTTGTGTATCCACGCTGAGAAAGAGTAATGATCATGGGCATTGATACCGCTGGGAAAATCTTCAGCTGGGCTGAGTAGCCTTGATGTAAGCTTTTCTAGAGGTTTCCTCTTTCCAGGGGCCACTGTCAGACCATACCTGGCTCGCCTGATGGACTGAAAGGTTTCCAAGTATCCTCCGAGGTTCTGGTTCTCAGGCACACTTCAGCGTCCTCTCCATTCCCACAGCCACTGTTCCCACTTCCTCTTCTTGCCATCTTTGTCAGGAAACTCATTGTTAAAATCTGTAGTAATCATGAGCCTAGATTTCAGGAGGGTTCTTCATTCCCTTGTGTCTCTAAGTGTTCCCAAAGATTTGGGGGAGTTTTGTTTGTTTACTGTTTGGGGGGAGTTTTGTTTGTGTTGGTGGTAGTGATAGTGTGTGTGTGTGTGTGTGTTTGTGTGTATGAGTGTATGTGTATGAGTATGTGTGGGTGAGTGTGTGAATATGTGTGTGAGTGTGTGCATGTGAGTATATATGTGTGAGTGTGCATATGAATGTGTGAGTATATGTGATTGTCTGTATGTGTGGTGTGTGAATTGTGAGTGTGTGTATGAGTATGTATGAGTGTGTATGTGTGTGTGAGTGTGTGTAGGTGTGTGAGAGTATGTGAGTGTATGTGTATAAGTATATGAGTGTATGCATGTGAGTATGTGAGTGTATGTGTGTGACTGTGTGTGTGTGTGTTTGAGTGTGAGTACATATGAGTGTATAAGTGTGTGTGTGTGTGTGTATACTTTTTTTGGAGGCTGCCTCGCTGCACTGGAGAGCAAGTAGACTATAATAAATGTTTCTAGGACATTCTTGTTCTAGGATGTGGTTGTATGTTCGAGGAAAAATGGAGTATGTATCCTACTCACTGTGCACCACATAGCTCTCCATGTGCCACATGGCCAGCGCCACAGCCCTGTGAGGTTTGTGTCATGTTCTATATTCCCAAGGAGAGCCAAGAGTCCTGCCTAATCTATCAAGCCAGGGGGAGGCCTAGCAGAGTTCACACACCAACCCCCCCTACCCCACCCCCCGCCCCGACAGCTGTGGTCCCCTTCTGCTGAAGCCAAGAGAGGGCCTGCAGATCACCCACATACCAACTCTAGCAAAAAGAGGGGGAAAGGCTGTTTACATATCCCTTTATAAGGCCTTTTCCACAAGCAGGTTCCAAATTTCTGACATCCATCCACAGACAGATGTTTTTATGGCACCTGTACAGTGCATTCTGGGATTACCCTGCACTGTCAGCACAAGCTCTGACATGTCCTTTGTTGGAGGATTTTCTTTTAGAGCAGGCACTGACCTGGAACATGCAGTGATCCTCTCGCCTCAGCTTGCCAAGTTCTGGGATCATAAGCACGCATCATCATACCACGATTCTGATGCTCTCTGCCGTGTGGGCTTTGTTGTTTGTGGGGTTTGACTTGGTTTTGTCTTTTTGTCTTCTCAGACATAGCCTCGTGTAGTTCAGACTTACCCAGAGATACCCTTGAACTTCTGATCCTGCTGCCCCCAGCTCCTGAGCACTGGGGTTTTAAGTGTGCCACCACTTCACATGTATGCTGTGTTGAGGGTCAAATCAGGACCCCACGCATGCTAGGCAAGCACACTCCCAACTCTTCATCCTCAGCCCCCAATGTTTTCTGTCATATTCCATGCTATTTTAATTTTCTTCAATGCTGGTTGCAACCCACAGAATGGATAGCACAGCCTCCTGGGGGTGGGGATGGGGTGGGGGCGTTGACCAGCAGTTTGAACATCCTTGCCTTGAAGAGATGGGGAGGAATGGAAAGAGAGAACGAACTGATAGAAACTCACTTTGTGGGTGGCTAAAACCACAGGATCATGCCCCACTCCAGGCTCTGGAAAAGGACTCAGCTATTCTGTCTGTTTCTGTCATCTATAGCTTAGGGACATCAACCCTCATTGACAGGTGACCCCTCAGGACCTGTCTCATGTGCCTAACACAGTTGAAAGAAAGATCAAGCAAACGGGAATCGGGAGGCAATAACCAGACTGCCCAGTCTGACCCTCATGTCTCTGATGTCTGGTCCTGTGGCTAGCACCCAGTGAAAACCAAGCAAACATTTGTGGCATTGGGGAGCGCCGTGGGAAATCATGTGTCTGTGGTGAGACAATGACACTTGGCCATGGCGCAGACCATGTGGTAGGACTTCTGAATCTGTAGCCAACTCAGAGTGTGTTCCGTTGGAGTGGTTTGCTTCCAAATTACAGAGCCTTGTTTGCATGGTGCTTTGCATCTCATTTGCATGCTCCTCACACAGTGCAGGGGTGGGGGCACAGAGAGCTCCTATTGCAGTCCTGCTCTGCTCTCCCCCATCAAATCCTTCATTCTGTGCGCCGGTGGCCAGACTTACAGCTTTGGGAGTGGGGAGTGAGGATTAGGCAGGGGTCCCTCAAAAGAACAGATTCTGGAAGCTGGAGGCTGTGCCAGCTTTTCTTTCTAGGCCTACACCATCGTGTTGGGTAAAAGGCACGGTGGAGGAACCGTGCCTCTAAGGACTAGGAGATAAAACCTCACCTAAAGGGACAGAGGTCAGATACAAAGATGTCTGGACAATTCTGGGAGAGAGGCCTGGGCCCAGAGAGAGTGGTTCAGGATAGGAAAGAAGACCTAGACCCAGACCAGAGAGACACACCAAGACAAAGGGAAGTGGGAGAAAGGAAGGAAGATGCCGGAGGGAAGAGAACAGCAAGGAGAGGAGGAGAGACCTTGCAGTGACGCAGGGCCCTGATGTGATGTGATGTGACAAGGCAGCTGCAAGCTGCTTGTCTCTGAAAAAAAAAAAAAAAAAAACGCAAGTGATCTGAGAGGGAGGCAGGGAAAGGCATCAGGGGAGCTGGGGACTGCCAGGCTCACTGCCCCTACTGCGCCCCTAAGCCCAGCCTGTCCCCAGGAAGCACCTGCTCCGTGTCTCGAAGGCCTATGAGCGCCTGAAAGGGCTCCCCATATGTGAAGGTGAGGGGGATGAGGAGGGGGCCACATCCTGGGTTGGAGATGACGCAAGAAGGCCAGAGGCTCTTTGCGAGCTGGACTAGCAAGCGTCCAGTGAAGTCCAAGAGAACGGCAAATACAGTTAGCTGGGCAGTCGTTAGGAGGCCACTGGCTATGGCATGTGGGATTCAGTGGTACTTGATGCCTGGCAGGCCTCCAGAAGCCAGCATTGGCAGGGAGGTCTGTGTCTTTGCCCTGTGGTTCCTACACCATCTTCCTGTCTCTGTCACATTCCCAAGGCAGGGCATAAGAGTAGGGAACTTTTTCTATTTTTCTGTTTTCTAAGTCAAACAGGGCAGTTACAGAAAGAGACTAAGTCTCCCCTGAATCCTCCGTGATAACACCCCTTCCATATGACTTGGGGCTTTCTAGAGACTTCTCCAAAGCAGAGCATCAACCTCTCAGAGACTTAGTCTGAGCCTCACCGTGAGACAGAGAACAAGGGACCAGACAGGATGTGGAACCGGATTGCCATTCCCCAGCAAATGCAGGACAACCATGGAGCAGACTCTGTGTGCCCTGGTTCCAGCCTTAGCTCAGACAACAGGGCATCCCAGCAGCCTGACCTGGGGCCCCACAACCTCAGGCAGAGCTGTCGTTCCCAGCCCAGAGCCTACGCTGGCAGCGCCCAGTCCCCTGGGATGTCACGTGTACACGCCATAGCCCTTTACGTCTCTGCTTCCTGGTAATGAAAGAGGTTTCTTTTCCCTACCACCCCCTGGAATTTAATTTCACGCCTAGGCCTCGGTGATTAATTCTCTCCCCCCTACCCTGCCCCTCCTCAGCCACCCTGGCGGCCCCTCCGCTTGTAAATTCTGCCCTGTGCCATGGAATTTGTGTATTTCGCATCAATTAAGTGTCACATTGAGTAATTCTTCTCTGGCACTGGCTCTGTTGATCCCAACCAATCAACCGTTCCCACTGGGGTGGAGGAGGGGAGAGGACCGCAGATCTGGACGGGAGGGAAGGGGGATGAGCATCAGTTGGCAATCAACGGTGCATCTGCCCCTCCTGTGTCTGTGAGGCACCGTGGCACACAGCCTGCCACGCATTGCCTAGGACGGAAATGTAAGATATGGAGGTGCCAGGCGGTTAAGAACACTGACTGCTCTTCTGAAGGTCTTGAGTTCAAATGGTGGCGCACAACCATCTGTAATGAGATCTGATGCCCTCTTCTGGTGTGTCAGAAGACAGCTACAGTGTACTCAAACATAATAAAAAATAAATCTCTAAAAAAAAAAAAAAAAAGATACGGTGGTGTCATAACCACCTCCCCTGGGCAGGGGAGACACTCAGAGCAGAGGTCATGAGACTCACCCAAAGTCTTAAGGCAGTCTAGAGACCAGGTAGATGTGTCACTTGGACCTCCTGGGTCCCAGCCATAAGCAGAGACAGAGAAGCACCTCTGGAAAGTTCCTCTCTGGGAGAGACTCCTGCCCTGACTCCTCTCCAAGGTACAAGAGCAAAGAGCTGACAGCCCCCATTGATGCGGTGAGTCTGCAGCTCCCCCATTTACTCCATTCAGCGTGTTAGATTATTCCATCTGGGGCCCCAGCTGCTGAACCAGGACAAGGGCAAGCTGCTTTCAGAGCTCTGGTCTGCCATGTCCTCCTGAGCTGGTCCCTATACTTCTCTGGTCTCAGTAACCTGTGTTCTCTAAAGTCACAGGCAGCTATAGTCTATAAAGCTGTCAGTGTGGAGTTTATCCAGCAAACTCAGCTCGCTGGCACACCCTCATTTCTGACTGCCTGCTTATTGCCCTCCCTCCTCCCCCAGAAACAGAGGGTACAACAGCCAGGAACCCCACTCCACAGTGGGCACAGGAGGGTCATCACAGGTCAACATTGCCTCAAAAAGCCTAGCTGTCCTCTGGGAAGATGGATGCCTGGCCTGCGGCAGCTGCTATTAAAAGACAGGTAGCCACAATTGTGGCCTCGAGGGGCAAGACAGCAGGCTGAGGCCAGGGGCTGAGGGAGACCCTGTGTTTCCATCTATGTTCTTCGACTTTCTGAAGCTCTGCACCTGAATATATTACCTCTTCAAAAAAACAATAACTTTACTTGTTTTCTTTCTTTAAAAGGAAAGGAATTGTTTGAAAGGGAAAGGAAAGAAGGAAACTCCGTGGGGGTCCAGAGAGAGTGGCAGCGGTGAGAGGGAGGGGTGCACATGAGAGACACAGAGGCTGGCTGGTGAACAATGAGAAAGAGTTGGTTGTGCAGAGCAGACTGGCTGGGTGTCTGGGCGACCCAGCTAGCCTTTGTGGGGACTGGGGAGGTGAGGATAGAACAAGCTACAGCCAGGGAGAGACCCTAGATAACGGTCGGAGAGTCAGCATAAAAGGTGGGGTTGAGGCCAGAGCTGGTGACACATGCCTGTGAATCCCAGCACTCAAGAGGGTAAGGCAGGAGACTAGCCAAGCATCGGGGGTTAGCCTGGGCTACTAAGCCAAGAGAAAAGAAGGGAAAAGCAAAAGGGTGTGTTGGGAGAAAGCTGGGGAGACAACCCAGTTGGTAAAGTGTCTACTCATCTTACAGGGTGCCCTGGGTTTGATCTCAAAATAAAGTGGCCATGGTGGTACATGCCTGTAATCCCAGGACTCAGGAGGTAAAGGCAAGGTAATCAGAAATTCAAGATCATGGTACAGTGAGATAGCTCAGAGGGTAAAGGTGCCACCTAGCCTGACAACCTGAGTTAGATCCCTAGGACACACACAGTGGAAGGAGAGAAACAGCTCCTGTAAGTTGATCTCTGACTTCAACACATGAGCCATGGCATATGCATATCCACATGTTCCAAAGTGCACACACACACACACACATTCACACACACACACACATGCATTCATACACACTTGCACACACACTACAATTTTTTTAAGGTCAAGGTTATCCTTGACATACAACATTGACTAGAGACCCTGTGTAAAAAAGAAAAAAGGGAGGGGTGGTAATCGGAGAAGAAGCACAGGTAGACCCTTGACAGCAGAGCTGGGATTCAAGGGACAGAAGGCCAGGAAGGACCTACCCATGAAGAGTAGGTCTGGGAAAACAAACAGGAGCTCCCATAAAGACACAGACATCTTGCTTATTGGGGCCCAGGTCTTCCACCTCCTAGGCTCATGTCTCCCAGGTGATGGCTTCTCTCTGCGTTACTCCCCACACTGTTCTGAACTCTGGGATATGCACCAGTCACTCTGAGCCTGAGCAGAAGGCTGGGCAAGAGACTGAAGAGCTGGCTTAGCCACTGAGGCTACTAGTCTCATAAGTAAAACTTCAAGGAAGGGCAGGGCACCACAACTGTTCACCCATTTGGAGGGTATCTCTAGTTTGCTTTGAGGCCCAGACAGATACCCACCACTCTCATGTCCAGGGTGAAGAGACCATCCACGTCCTCCCTTGTCATTCTTTCTGTCCTCGGTCATCCCTGGAGCCTGGTTCACAAGCATGGTTCTCAGGGCTCAGCCTAGTCTAGGCACACACATGGAGGATACAGGCGCTCCTCTGGAAATGCTACCTCACTGTAAGCACGGGCAAGGGGCTTCTGTCTGGAGGCCTGCTTCCCTGCACTCTTCCCTTCCTCTGCCCAGGGTGGCCTCAGCTCCTGACCCTCTGTTTTTCCAG
Seq C2 exon
ACCCTGCAGAGTCCATCCCTACCATCCTGGATGGCTTCCACTCCCAGGAAGTGTGGACTGGCCACTCGGTAGAGCTGCCCTGTGCTGCTTCCGGCTACCCCATCCCTGCCATCCGCTGGCTCAAAGATGGCAGACCCCTCCCTGCTGACAGCCGCTGGGCTAAGCGCATTACAGGGCTGACCATCAGTGACCTGCGCACTGAGGACAGCGGCACCTACATCTGTGAGGTCACCAACACCTTTGGGTCAGCAGAGGCCAACGGCATCCTCACAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032087-Dscaml1:NM_001081270:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(50.0=94.0)
A:
NA
C2:
PF0767911=I-set=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: