RnoINT0051362 @ rn6
Intron Retention
Gene
ENSRNOG00000016502 | Dscaml1
Description
DS cell adhesion molecule-like 1 [Source:RGD Symbol;Acc:1304887]
Coordinates
chr8:49964760-49972026:+
Coord C1 exon
chr8:49964760-49964906
Coord A exon
chr8:49964907-49971747
Coord C2 exon
chr8:49971748-49972026
Length
6841 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
CTGATGCTCTCTTTCTCCAGACC
3' ss Score
10.58
Exon sequences
Seq C1 exon
AAAACAGGTTTTTCATCACATCACACGGTGGGCTGTACATCTCGGACGTGCAGAAGGAAGATGCTCTCTCTACCTACCGCTGCATCACTCAGCACAAATACAGTGGGGAGACTCGTCAGAGCAACGGGGCTCGGCTCTCTGTGACAG
Seq A exon
GTAGGTGCTTGCCCAGGGCGCTGACCCTCCCGTGGGTACGGGGTGATCATGGGCAATATATACCACTGGGTGAGACTTCATCAAGTAGCCTTGATGAAAGAGATTCTCTAGAGGTTTCTTCTTCCCAAGGGGTCACACCTGGCTCTCCTAATGACTGAAAGGTTTCTGTGGACCAGCAGAGCTTCTGCTTCTCAGGCACACTTCTGCGTCCTCTCCATTCCCACAGCCACTGCCCCCACTTCCTCTTCCTGCCATCTTTGTCAGGAAACTCATTGTTAAAATCTGTGGTAACTGTGAGCCTAGATTTCAGGAGGGCTTTTCACTTCCTTGTGTCTCTAAGTGTTACCGAAGGTTTGGGGGGTTGTTTATTGTTTGGGGGGAGTTTTGTTTGTGTTGCCGCTTGTTTGGTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAGTTTATGTGGGTGAGTGTGTGAATATGTGTATTAGTGGGAGTATGTGTGTGTGAGTATATGTCTGTATGTGTGTGTAAGTATGTGAGTGTGTAAGTGTGTGATTAAGTGTGTATATATGTGTGACTATATTTATGTGAGTGTGTGAGTGAGTGTATGAGTACATATGTGAGTTTATGTGGGCGAGTGTGTGAATACGTGTATGAGTGTGCATATGTGTGAGTGTGTGAGTATATGTGTGTATGTGTGTGCAAGTATGTGAGTGTGTGTGTGAGTGTGAGTGTGTGATTAAGTGTGTTTGTGTGTGTGACTATGAGTACATTTATGTGCGTGTGTAAGTGTGAGTGTATGAGTACATATGTGAGTTTATGTGAGCGAGTGTGTGAATATGTGTATGAGTGTGTGTATGTGTGAGTGTGTGAGTATATGTGTGTAAGTGTGTGCAAGTATGTGAGTGTGTGTGAGTGTGAGTGTGTGATTAAGTGTGTTTGTGTGTGTGACTATGAGTACATTTATGTGAGTGTGTGAGTGTGAGAGTACGAGTACATATGTGTGTATGTGATTATGTGATGTGTGAGTGTATGTGTATTTGTGTGAGTGTGTATGCATGTAAGTGTCTGTGTGTACACACGTTTTTGAAGGCTACCTCACTGCACTGGAGAGCAGGTAGACTGTGATAAATGTGTCTAAGAGATTCTCATTCTGGGGTATGGTTGTGTGCCTGAAGGAAAATGGAGCATGTGTTCTGCCCACTGTGTACCACATAGCTCTCCACGTGTCACCCAGCCAGCACCCACAGCCCTGTGAGGTGTGTGTAATGTTCTGCATTTCCAAGGGGAGCCAAGTGGCCTGCCTGCACTATCAAGTCAGCGGGAGGTCCGGGCAAAGCTCCCACTCCAGTCCCCCAAGCTGCACTACCCTTCTGCCGAAGTCAAGGGAGGGCCCACAGATCACCCGCATACCACCTCTAGCAAAAAAGGGGGGGGGCTTTTATACATCCCTTTATAAGGCCTTCTCCACAAGCAGGCTCCAAATTTCTGACAACCATCCACAGTCATGTTTTTATGGCACCTGTGCAGTGCAAACTGGGATTACCCCACACTGTCACCACAGGCCCTGATATGTCTGTCCTTTGTTGGATGATTCTCTTTTAGCAGGGGTAGTGGGGGACACTGACCTGGAGCATGCAGTGATCTCTTGCCTCAGATTGGCAAGTTCTGGGGTCGTCAGCATGCGTCACCATACTATGATTCCGACGCTCTCTGCTCTGTGGGTTTTGTTGTTTGCGAGGGTTTGATTTGGTTTGGTCTTTTTGTCTTCTGAGACAGAGTCTCATGTAGTTCAGACTCGTCCAGTGATACCCTTGAACTTGTGATCCCGCTGCGCCCACCTCCTGAGCACTGGGATTTTAAGTGTGGCGCCACTCCACGTTTGTGCTGTGTGGAGGGTCAAGCCAGGACCTCATGCGTGCTAGGCAAGCACACTCCCAACCCTTCATCTTCAGCTCCAGTGTTTTCTATTCGCCCTATGCTGTTTTGATTTTCCTCAATGCTGGTTGCAACCCACACAATGGATATCACGGCCTCCTGTGTTTGTGGGGAGAGGGGGTGGCAGATTGACCTGCAGTTTGAGCATCCTTGCCTTGAGGAGATGGGGCAGAATGGAAATGGGGGATGAATGAATAGAAACTCACTTTTTATCAGTTTTGGGAGGGCTAAAACCATGGGGTCATGCCCTACTCCGGACTCTGGGAAAGGACTCTCTGGGAAAGGCTACTTGTCTGTTTCTGTCACCTATGGCTTAGGGACATCAACCCTCATGAGCAGGTGACTCCCGGGACCCTTCATCTGCCCAGCACAGTTGAAAGAAAGATTAAGAAAACAGGAATCTGGAGACAAATAACCAGACTGCCCAGTCTGGCCCTCATGTCTCTGACGTCTGGTCCTGTGGGTCACACACAGCATGCACCAAGTAAACAATGGTGGCATTAGTGAGCACCAACGGAAAGCACCAACGGAAGTCATGCTTCTGTGGTGAGACAGTGACTCTTGGCCATGGCGCAGACCGTGTGGTAGGACTTCTGAATCTGTAGCCAACTCGGAGTGTGTTTCATTGGAGTGGTTTGCTTCCAAATTACACAGCCTTGTTTGCATGGTGTTTTGCATCTCATTTGCATTCTCCTCACACAGTGCAGGGGTGGGGGCATGGAGAGCTCCTACTGCAGACAGGCTCTGCTCTCCTCCATCAAATCCTTCATTCTCTGCTCTGATGGCCAGACCTAGAGCTCTGCGGGGTGGGGAGTGAGGATTAGGCAGGGGTCCCTCAGAAGAACGGATTCTGGAAGCTGGAGGCTGTGCCAGTTTTTCTTTCTCATCCTATGCCATCATGGTGGGTAAAAGGCATGATGGGGGAACTGTGAGAAAGATGTCATACCTCTAAGGACTCAGAGATAAACGCTACCTAAAGGGGCAGAGGTCAGATACAAAGGTGTCTGGACAATCCTGGGAGAGAGGCCTGGGCCCAGAGAGAGTGGTCCAGGACAGGAGAGGAGACCTAGACCCAGACCAGAGACACACACAAAGACAAAGAGAAGTGGGAGAAAGGAAGGAAGATGCCGGAGGGAAGGGAACAGAAAGAGAGGAGGGGAGGCCGTGCAGTGACGCAGGGCCCTGATGTGATATGATGTGACAAGGCAGCTTGTCTGCAAGCTGCTTGTCTCTGCAAAAATGCAAGTGATCTGAGAGGGAGGCAGGGAAAGGCATCAGGGGAGCTCCGACCTCCAGGCTCATGGCCCCTAGTTGCCCCTAAGCCCAGCCTGTCCCCAGGAAGCACATGCTGGTGTCTCTAAGGCCCATGAACTCCCGAAAGGGCTCCCCATAGATGAAGGTGAGAGGGATGAGGAGGGGTCCGCACCTTGGGCTGGAGATGACACAAGAAGGCCAGGGGCACTTTGCGAGTTGGGCTAGCAAGCGTCCAGTGAAGTCCAAGAGAACGGCAAATACGGTTAGCCGGGCAGTCATTAGGAGGCCACAGGCTACAGTATGTGGAGTTCAGTAGGACCTGATGCCTGGGAAGCCTCCAGAAGTCAGCTTCGGCAGGGAGCTCTGTGTCCTTGTCCTGTTGTTCCCGCACTGTCATCCTATCCCTGTCACATTCCCCAGGCAGGGCATAAGAGTAGGCAACTTTTATTTCTCTGTTTTCTAAGTCAAACGGGACAGTTACAGAAAGAGACCAAGTCACCCCTGAATCCACCCAGATAACACCCCTCCTTATGACTTGGGGCTTTCTAGAGAGTTCCTCCAAGCACTCTTAAGAGCATCAACATCCCAGAGACTTAGTATGGGGCCTCACAGAGACCAAGGGACCACACAGGATGTGAAACCAGCTTCCCATCCCCCAGCACATGCAGGACAGCCATGGAGCAGACTCTGTTTGCCCTGGTTCCAGCCTTAGCTCAGACATCACAGGACATCCTAGCAGCCTGACCTGGGGTCCCACAACCTCAAGCAGGACTGTCTTTTCCCAGCCCAGTGCCCATGCTGGCAGCGCCCAGTCCCCTGGGATGTCACGTGTACACGCCATAGCCCTTTACGTCTCTGCTTCCTGGTAATGAAAGAGGTTTCTTTTTCCCTACCACCCCCCGGAATTTAATTTCACGCCTAGGCCTCGGTGATTAATTCTGTCCCCCACTACCCTGCCCCTCCTCAGCCACCCTGGCGGCCTCTCCGCTTGTAAATTCTGCCCTGTGCCATGGGATTTGTGTATTTCGCATCAATTAAGTGTCACATTGAGTAATTCTTCTCTGGCAGTGGTTCTGTTGATCCCAACCAATCAACCATTCCCACCGGGGTGGCGGGGTGGCGGAGGGGAGAGGACAGCAAATGGGGAAGGGAGGGAGGATGAACATCAGTTAGCAATCATCCGTGCACCTGCCCCTCCTGTGTCGGTGAGGCACTGTGGCACACATCCCGCCATGCATGGCCTAAGAAAGTAACGTAAGATACGGAGGTACCATAACCACCTCCACTGTGCAGGGGAGAGACTCAGCACACAGGTCATGAGACTCACCCAAAGTCTTGAGGCAGACTAGAGACCAGGTAGATCTGTCACTTAGGCCTGCCGGGTCCCAGGCACAAGAAGAGACAGAGAAGTGCCTCTAGAAAGTCCCTCTCTGGCAGAGACTTCTGGCCTGACTCCTTCCAAGGGACAAAAGCGAAGAACTGACAGTCCCCGTTGATGAATGCGGAGTGCGGCCGGTCAGCAGCTCCCCTGCCCACTCCCAGACAACATTCAGCGTATTGGATTATTCCATCTGGGGCCCCAGCTGCTGAACAAGGGTGAGGACGACCTGCTTTCAGAGCTCTGGTCTGCCGTGTGATCCTGGGCTGGTCCTAAATGTCTCTGGTCTCAGTAACCTATGTGTCACAGACAGCAGAAGTCTAGAAAGTTGTCCGTGTGGAGTTTAGCCAGCAAACTCAGCACGCCGACTGGCATGCACTCATTTCTGACCGTCCCCCCCCCCCGTTCCCCAGAAACAGAAGGTTCAACAGCCAGGAACCCCACTTCCACACTGGGCACAAGAGGGACATCACAGGTCAACACTGCCTCAAAAGCCTGGTTGTCCTCTGGGAAGATGGATGCCTGGCCTGCGGCAGCTGCTATTAAAAGAGACAGGTAGCCATAGTTGTGGTGGCCTCAAGGGGCAAGAGAGCCGGCTGAGGCCAGGGGCTGAGGGAGACCCCGTTTCCATCTCTGTTCTTCAGCTTTCTGAAGCTTTGCGCCTGCATATATTACCTGTTCAAAAAAAATAAATAAATAACTTTACATGTTTTCTTTAAAAAAAAAAAGAAAAGGAATTGTTTGAAAGGGAAAGGAAAGAAGGAAACTCCGTGAGAGTCCAGAGAGAGTGGCAGCAGTGAGGGGGAGATGGGCATGAGAGCCCGCTAGGGCTGGCTTGCGAACAGTGAGCAGGAAGAGTTGGTTGTTCAGAGCAGACTGGCTGGGTGTCTGGGTGACCCAGCTCACCTTTGTGGGGACTGGGGGGGGGATAGAACAAGCTACAGCCAGAGATAGGTTCTAGACAATGGTGGGAGAAAAGGGGAAGGAGGGCTAAGGCCAGATCTGTTGAATCCACAGGCCTATGAATCCCAGCACTCAAGAGGGTAAGGCAGGAGGCTGTCCAAGCATTGGGGGTAAGCCTGGACTAAGTCAAGAGAAAAGAAGGAAAAAGCAGAAGAAGGGTGTGTTTCGGGGAAAGCTGGGGATATGAGTCTGTTGGTAAAGTGTCTACTGATCATACGGGATGCCCTGGGTTTGATCTAAAACCCAGGTGGCACATGCCTATAATCCCAGGACTCATACGATAGAGGCAAAATAATCAGATATTCAAGATCATGGCACAGTGAGATAGCTCAGAGGCTAAAGGTGCCACCAAACCTGACAACCAGAGTTAGATCTCTAGGACCCACACAGTGGAAGGGGAGAGCCAATTCCTGTAAGTTGTTCTCTAACTTCAATACATGAGCCATGGCATGAGCATGCCCATGTGTTCAAAAGTGTGTGTCCGCACAGGCGTGAGCACACACAAACACACACACACACACTACAATTTTTTAAGGTCAAGGTCACCCTTGACATAGCACACTGACTAGATACCCTGTCTATAAAGAAAACAAGGGAGGTGTAGTATGCAGAGAAGGGCTGGTAGACCCTGGACAGCAGAGCTGGGATTCAAGGGACGGCCCTACCCGTGAAGAGTCGGGCTGAGAAATCAAACAGGAACGCCCATAAATACACAAACATCTCGCTTAAGGGGGCCTGGGTCTTCCGTTACTTAGGTTCCTCTCCCAGGCGCTGGCTTCTCGTTGCTTTACGCCCACATTGTTCTGAACTCTGGGGTATGCACCAGTCACTCTGAGCCTGAGTAGAAGGCTGGGCAGGGATTGAAGAGCCACCATAGCCACTGAGGGTACTAGACTCATAACTAAAATGTCAAGGAAGGGCAGGACACCCCAACTGACCACCCATTTGGTGGGTATCTCTAGTTGGTTTTGAGACCCAGACAGATACCCACCACTCTCATGTCCCAAGATCAGGGTGAAGAGATCCCCCTATGTCCTCCCTTGTCATTCTTTCTGTCCCTTTGATTTTGAGCTCTGCCGTGCCCTCAGCCATCCTTGGAGACTGGTTCACAGTCATGGTTCTCAGGGATCAGCCTGGTCTAGGCACACACATGGAGGATACACACACTCCTCTAGAAATGCTACCGCCCTGGAACCTGCTCATTGTAAGCATGGGCAAGGGGCTTCTGTCTGGAGGCTTGCTTCTCCGCACTCTTACCTTCCTCTGCCCAGGGTGGCCTCAGCTACTGATGCTCTCTTTCTCCAG
Seq C2 exon
ACCCTGCAGAGTCCATCCCCACCATCCTGGATGGCTTCCACTCCCAGGAAGTGTGGACCGGCCACGCAGTCGAGCTGCCCTGTGCTGCCTCTGGCTACCCCATCCCTGCCATCCGCTGGCTCAAAGATGGCAGACCCCTCCCTGCTGACAGCCGCTGGGCTAAGCGCATTACAGGGCTGACCATCAGTGATCTGCGCACTGAGGACAGCGGCACCTACATCTGTGAGGTCACCAACACCTTCGGGTCAGCAGAGGCCAACGGCGTCCTCACAGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016502:ENSRNOT00000022476:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.180 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138951=Ig_2=PD(50.0=94.0)
A:
NA
C2:
PF0767911=I-set=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]