BtaINT0052843 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016692 | DSCAML1
Description
Down syndrome cell adhesion molecule like 1 [Source:HGNC Symbol;Acc:HGNC:14656]
Coordinates
chr15:28616192-28623243:-
Coord C1 exon
chr15:28623087-28623243
Coord A exon
chr15:28616471-28623086
Coord C2 exon
chr15:28616192-28616470
Length
6616 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
3' ss Seq
TCATGCTCTCTGCCTTCCAGACC
3' ss Score
9.76
Exon sequences
Seq C1 exon
ATGTCTCCAGAGAACAGGTTTCTTATCACTTCCCACGGCGGGCTGTACATCTCTGACGTGCAGAAGGAGGACGCCCTCTCCACCTACCGCTGCATCACCAAGCACAAGTATAGCGGGGAGACCCGGCAGAGCAACGGGGCCCGCCTCTCTGTGACAG
Seq A exon
GTAGGCCAGAGGGCTGGAGAGGAAGGGCGGGCACCGGCCTGCCCCTGAGACTGGGTGGGCGTGCTGACACCATGGAGCAGGGAGTCTGCCGTGTAATCAGGGTATTCAGGAGGAGCAGATTCAGGAACACAGGCACAGAAAGCACCGAGCAGACCTTATCTGGTTTGATCTGGGATATGTCTCATATAAAGAACTCTGCACTTCAGTTCTTTTCAGGCGTCTACCTGAGAAAGCTGAATGCCCCTGAAGAACTGTTGGTTGATTTTGTTTAGTCACTAGGTCATGTCCATTTCTTTGTAACCCCATGGACTGTAGCCTCCAGCCTCCTCTGTCCATGGGATATTCCAGGCAAGAATACTGAAGTGGGTAGCCATTTCCTTCTCCAGGGGATCTTTCTGACCCAGGGATCAAACCCACGTCTCCTGCGTTGGCAGGCAGATTCTTTACCACTGTACCATTTATCAAATACTGGGGGATATGGAGCCCATCCCCTCTCCTTTTTTTGCCTTTGACGCCTGGAAGCTCATAGATATAATCTACTGCTCCAACGCAATAATGATTGGATTTGATTGGATTAAGGAGACTTTGTATTTCCTTGTGTCTCTATTTTTTTTAAGATTCTATTAGTTTATTTATTTTTGAATACATATATATCTTTCATTAGGGGCTTCCCCAGTGGCTTAGCAGTTAAGAATCAGTCTGCAATGTAGTGGCTTCAGGAGACACAGGTTTGACCCCTGGGTGGAGGATATCCACTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATCCCATAGACAGAGGAGCCTGGCAGGCTACAGTCCATAGCGTCGCGGAGTCGGATACGACTGAAGTGACTGAGCACACGTGCTCGTATCTTTTATTATAGCCTACCTCACAACATTTGAAAGTAGGCAAACACAGGTAAAAAAAAATCTCTAAATTAAGTAAAGGATCTTTTTTCTGGAATGATTATAGCTTCTTACAGAAGGATGGAAGCTGCTATTTCCTGAATCTCCATGTGCCAGAAATTTAGTTTATGTACTGTCTCTTAGGCACTATCATAGCCGGGTGAGGTGTGCACTGTGCTCCGTACTTCTATAGATAAGAAAATCAGACCTTAGGGAAGCCAAGCCACTTATCCCAACTGTTTAACCAGTGGGAGGCACAGCCAGAATTCACATCCTCCAGCCACAGACCCCCATGGAAGGGGCTAACTGAACACCATGCAGATGCCCCAGTTACAGAGGAAAGGTCACCTGGCGCTCTTCAGGGGAGGCCTCCTGGAGTAGCGCTTTTCAGACTCTTGACAGTGATCCTCAGACATCATCACCGGTGCCATGCATGCTGGTGTTTCCTACCAGACGCACTGTGACGCACTCTGATATTTCCTATTCTACTCTATCCTGTCTCGGTTTATCTAAATGCTGGTCACCACTCACCACATGGATTCCATCACTTCCTAACCGTGTGTGACCTGCAATTTGAAGATCCCTGCTCTTATGGAAGCGGGGTCAGAGTAGCTTCTGAAAGGAAGATGAACTGATTGTCAGAACACCTGGTTTGGAGACTAGTACCACCAAATCACTCAACCCCTTTGGGTCTCTGTAAAAACAAGCTAGATTAGGTGACTTCTCAAATTCCATTTTTTTTTTGTGTGTGTGTGGAGTATAGTTGCTTTGGGCTTCCCTGGTGGCTCAGAATATGCCTGCTATGGAGGAGACCTGGGTTCAATCCCTGGGTCTGGAAGATCCCCTGCAGGAGAAAATGGCAACCCACTCCAGTATTCTTGCCTGGAGAATTCCATGGACAGAGGAGCCTGGCAGTCTACAGTCGATGGGGTTGCAGAGAGTTAGACATGACTGAGCAACTAACATATAGCTTATATAGCTGCTTTCCAATGTTGTATTCGTTTCTACTGTACAGCAAAGTGAATCAGCTCTATGTATACACATATCTCAGCTTTTTTTGGATTTCTTTCCCATTAAGGTGACCACCAAGCACTGAGTAGTTTCCTGTGCTACACAGTCGGTTCTCATTAGTTATCTGTTTTATACACAGTGGTGTATATATGCCGACCCCAATCTCCCAGTCCATCCCACCCTCCTCCCCCTCTTGGTGTCCATATGTTTGTTCTCTCTGTCTGTGAGGTGACTTCTCAGATTCTGTCTATCTCTCTCCTGTGATTTGGGGAGGATTACCCTGACCAGCCAGAGAAGGCGATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGGCGGAGGAGCCTGGTAGGCTGTAATCCATGGGGTCACTAAGAGTCGGACACGACTGAGCGACTTCACTTTCACTTTTCACTTTCACGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTTTTGCCTGGAGAATCCCAGGAACGGGGGAGCCTGGTGGGCTGCCGTCTATGGGGTTGCACAGAGTCGGACGCAACTGAAGCGACTTAGCAGCAGCAGCAGCACCCTGACCAGCAGGTGACTGTATCAAGGGCCCCCTCTTATTTGCCTGGTACATTTGGGGGGCAAGACCAGAAGCCAGGAGAGCAAGGATCGGGCTCTCTTTTTCTCTTGTGTGTCTCCAAAGCTTGGGCCTGTGCCTGGCACATAGTAGGTGCTAAGTCAATATTTGTGGTTAAAACTAGCCAATGCCAAGTGAAACTGCGCTGTTGCTTGGGGAGGAGATGGGACCGCACAGTGTGGCCCCACCTTTGTGGCTAGACCTTGCCATCTGCAGCCCAGTTCCCAAACGTGCCGGTGGCTCCCTTCCGAATTACAGGGACTTTTGGGTATGGTATTTTGCATCTCATTTGCATGCCTCTCACACGGCACCAAGTCCCCCATCCTGCTGGGCTGCTGCTTGCCCTTGCATGAATATTTAGCCCCTTCATCCTACTGATCTTACTTCTGCTTTTGTCCCTCCAAAAAGACACCCTTTAAACTAGAAGAGGGCCTTCCCTGGTGGTCCAGTGGTTAAGACTCTGCACTTCCAGCATAGGGGGTGCAGGTTCCATCCCTGGTAGGGGAATGAAGATGCCACATGCCACATGGTGCAGCCAAAAAATGGGGGTGGGCGGAACTGGAGGATATGCCAACCCTTCTCCCTCTGGGGGGCTGTGGCGAATGCCTGCCAGCTGGGGCTGGGGGGCGTGGAGAATGGGAGATGCCACTCAGAGACTCAGAGATAAAGCCCAGATAAACAGAGAAGCAAAGACAGGGAGGCACCCGGATGACAAAAGAGGAGAGACATGGGCACAGAGGGAGCAAGACAGGGGACAGAGGAAAACAGAAACCTACCAGAGAGGTGAGGGTGGACAAGACGACAGCGGCAGGGAGACAGAGACCCAGAGGAGGCCGCTGGGAGTGCAGAGGCACTCCGGGGAAGGGGCCCCAGGACTGACTCGGGCCCTGATGTGATGCGACGTGACGAGGAAGTCTATGCGCTGCTTGTCTTGGCAGAAATGCGACTGATACCCAGGCAAGGCAGTGCAGAGGGGAATTCGTGCCAGGGGGGTGTTCAGGCCGCAGCCCCCCGACCTCAAATCTCAGATCCATTTCCTGAGTCGAGGGTAGGGATCAGCTTTCACCTGAGCAGAGGCAGATGCAAGGAAAGTCTGAGCCCCCTCAAAAAAGGCCTAATAACCATTCGACACATTGAGGTGCTTTTTAGACTTTATTACCCAGTGCTGTCCTGAGCATCTTCTCTGTGGAGTAGGCACCTTCATCTGCATTCATAAAGGAGGGGACCTCCATTCATAAAGAGTGACCAGAGAGGCTGAGAGGCTACACCCGGGTTCCCCAGCTCACGGGCTGCCAAGCCGGGTGCAGAAGCCATGTTCCAGGGTGGCATTGTTCAGCCAGCTGGGGGAGGTCCCAGCAGCATCCCCCCAACTCCAGGGCACCCTGACCCCCTCACAGCAGCCCCGCCTCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCTTCCTCCACCGCCCCGTCGGCCCCTCTGCTTGTAAATTCTGCGGTGTGCCACGGAATTTGTGTATTTTGCATCAATTAAGTGTCACGTTGAGTAATTCTTCCCTGGCACCGGGTTTGTTTATCCCAACCGTTCCCACAGGGTTGTAGGGGAAGAGGCCGCAGAAGCTGGCGGGGCAGGCGGGCGGGCACGGAATAGTAATCGCCCGGCACATCTGCGTGGCGGTTCGGCGTCAGCCTGGCTCTTTGACATACGTTGTGCTTTGTTGCCCACCACAGCCTGGGGAGATCTGGAGATGGCAGTGTCACCTCTGCGTGCAGGAAACTCAGACTCTGGGAGGTCATAAGACACCCCTACCCACCCACCCGAGGTCACCCAGCTCAGCAGTGACCCCGGCCACTGGCATCAGGGTCGCCTGATTCCCACTCCCCGGCTGCTTGTGAGAAGCCTTGGAGGGTGGGAAAAGAGCAGAGAGCCTTCTGCAGGGAGGAGCCTTCCAAGCACAGCCCCTCTCCAAGGGGGCGGGTGGGGGGCAGTCACAGGGTGAGCCGAGAACAGAGGACATTTCCCGGTTCGTCAAGGAGGGGCCAGCAGGGTGTCAGCACTCACCACTCACCCTGGAGCCAGATCCAGTGTTAGATTGTTCCGTCTCAGACCGCATTTACTGAACAAGCATGGGGAGACCTGGTTTTAGATCCTGGCTCTGCAGTGGGATCCTGGGCAGGTCACTGCACCTCTCTGGTCTCAGGGTCCCCATCTGTGTATGCCCTCCAAGTCCCTAAGGACCTCCCCCTAGTGGCTCAGAGGGTAAAGAATCCTCCTGCAATGCGGGAAACCCAGGTTCGATCCCTGGGTTGGGAAAATCCCCTGGAGAAGGAAATGGCAATCCACATCAGTATTCTTGCCTGGAGAATCCCATGGACAGCAGAGCCTGGCGGGCTACAGTCCATGGGGTCACAAAGAGTCAGACACAACTGAGCAACTTCACTTTCACTTTCCAAGTCCATAAGTCAGCTCTACTGTTCCATGAGCCTATGAAGTTCCGCAATGTGGAAAAGGCAGACCGCTGGCCCACCCCCTGCCCACGTGCCCCCATTCACCCTCCCTCGGATGTCTATGGCTCAGGCAGCCCTGCTCTGCGCCAGGCACGTGGGGATGCCACAGGGGATCAGCACTGCCTCAAGGAGCTTCCAGGGAAACCGGATACATGGCCTGGTGCAGACGGCTGCTGGCAAGAGCTGTCGGGTTTGGGGTGGGGGGGCCCGAGGGCGGCAACGGTGGTTGCCTCTGGGAGGGAAATGGGGAACTGGAGGCGGAGCGAGGGGACTCCCTTTTCACTCTATGATCTTGTCTACTTTCAGAAGTTTTGCCATGTGTGCGTATGGTGCCTTTTTTTTTTTTTAATCTTTTAAAAAGAAAAGTTTGCTTGAAAATAAAATGAAAGAAAAAGAAAACCCTATGGGCGTCCAGTGAGGGTGGCCTGGGGGAGATGTCCAGAAAGGGTGAGACTGAAGCTGCTTTCTGAAAGATCAGTAGGAGTTGGCCAAGCAGAGCGGGCTGGTGGGGCACCCAGGTGGCAGGCAGTGTGCTGACAACATGCCCGGTGCGGGGAAGTGGTGACATCAGAAGGTCGGGGGGGCGGGCCGGGCCAGGGGACCTGGTTGGGGTGAGATCACAGATCATAGAGGCCTAACTCAGGATAGGAAGTGGGGATTGTAATATGTAGGTAAAGGGAGCCTGTGGGGTTTACATCAGGGGAAGGTCCCCAGTGGGCAGAACACCCAGACAGGCCTTTCAGGGTGAGAACTAGACTGAGGTAGCAGCCAGAATGCTGCTCAGATGGCAGGGATGTCGCACACAGAACCCCATCGATGAGGGCCTGGTCTGGTTTGGGAACACAAAAGAGGGGAGCATTGCTGGATGGCAGGTGTATTTTACAGAAGGCTTAACTTCTGAATCCTTCTGGGCTTGGAGAGAAAAACACTGCCTCCTCTGAGCCCACCCAGATTGCAGGTGGGAGCAGGCAGGACAGAACCGAGGTGCCCATCCTTGACAGACCCAGACCAAAATGGACCAGAATTATAGTCCCAAGAGGTCATGATTTTCATGCCATGGGGACTGTCTGTATGAACATCTCTCCCTGCCTCTTGTGGTTTTGCTTTCTCCCTCTGTTTGTCTGTCATTCTAACCTAGTCTGCCCACCACATCCTTACCTCCCTCAGCCCCTGCTCCCAGCCATGCTTCCCAGGGCCTCCATCTGGCTGAGCAGGAGAGTTTGGGCCAGAGTCTGGAGCACCAGGGGATCCAGTGAGCCATCCCACTGGGTATCACTCACTCCAGGCACCAGTGGGCAGCAAGTTCTGGGTGCCTGCCTTCCCACCCCGACCCCCACCCCACCCTTCCCAAGACTGGCCAGGACCACTCATGCTCTCTGCCTTCCAG
Seq C2 exon
ACCCTGCTGAGTCGATCCCCACCATCCTGGACGGCTTCCATTCCCAGGAAGTGTGGGCCGGCCACACCATGGAGCTGCCCTGCACCGCCTCCGGTTACCCCATCCCTGCCATCCGCTGGCTCAAGGATGGCCGACCCCTCCCAGCCGACAGCCGCTGGACCAAGCGCATCACGGGGCTGACCATCAGTGACCTGCGGACCGAGGACAGCGGCACCTACATTTGTGAGGTCACCAACACCTTCGGCTCGGCAGAGGTCACAGGCACCCTCACGGTCATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016692:ENSBTAT00000030167:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.170 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0767911=I-set=WD(100=91.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development