GgaINT0141649 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1598128-1598510:-
Coord C1 exon
chr26:1598428-1598510
Coord A exon
chr26:1598283-1598427
Coord C2 exon
chr26:1598128-1598282
Length
145 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
AGCCTGCCCCTTGCCTGCAGGCT
3' ss Score
8.44
Exon sequences
Seq C1 exon
TCCTTAGCCAATGGCTATGAGCTCTTTGAGGTGTCAGAGGAGAGGGACGAGGAGGTGGCTGCTTTCTGCCATATGCTGGATGT
Seq A exon
GTGAGTACCGTGGACTTGTATGAGCCATCCCTTGCTGCACCCCAAGCCCTTGCCTGGGGCTGCTGGGCTGTGTGAGATGTCCCCAAATGGAGGCATTTGCAGAGGGAAACATAAAGCCACCCCTCAGCCTGCCCCTTGCCTGCAG
Seq C2 exon
GCTGCGGTCCAGCTCCAGCCCCCAGGACTATTCCCTGACTGGCTTCGTGTGGAGCGCCGTCAACCTCAGCCCCGAGCACCTGGGACATGGCATCAGCCTGAAGGTGACAGTGCTGTGTGACAGCCTGCGGGAGCCCCTCACCTTCACCTGCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079413=PI3K_rbd=PU(34.4=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTATGAGCTCTTTGAGGTG
R:
AGTCGCAGGTGAAGGTGAGG
Band lengths:
227-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]