BtaINT0111680 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2025133-2025986:-
Coord C1 exon
chr16:2025886-2025986
Coord A exon
chr16:2025288-2025885
Coord C2 exon
chr16:2025133-2025287
Length
598 bp
Sequences
Splice sites
5' ss Seq
TGTGTAAGA
5' ss Score
3.68
3' ss Seq
TCCCCTCTCTTCCTGCACAGCCT
3' ss Score
10.31
Exon sequences
Seq C1 exon
GTGGGCTCCCGGCCCCACACCGTCGCCAATGGCCACGAGCTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCATTTTGCCACATGCTGGATGT
Seq A exon
GTAAGAGTTAATGACGGGGTTAGGGAGGGCTGTGGGGCGGGGAGGAGACTCAGTCCTTTCAGAACTTTCTAGGGAGGAAGAAGAGCCATCTGTAATAGATCTCAATTATAACTATGGGGTGCTTCCTGCAACCGGTGTTTGTAGGCTGTTTTGGAGTCTTAGAATTTTCACATTGTGGACAAAATTCATGAAACTTGGCTCTAACAAAGTATTTCCAATCACTTCAGGAGCAGTTGCCCTTAGGAGCAAATATACCCCAGATGGAGATAAAGGGTGTAATCTTATCTGGAGCTAAAAGAGAAAGGAAATGGATTCAGAAAAATATTCCTCGGAACTTATTATGGAAAGCTGTGTTGTTTAGAACTGTCCCTAATGTTCAACTCAGCTTGAGAAACGTTTTGCAACTGTAACAAATGTGTCAAGAACATGGTTTTGCAGAGATGCTTCCCCACTGTCCCCATCCTGGCCTGAAGACCTGGAGGGCCGCAGGCGGGATGGGCATGGAGGGGCCCTTGGGCCTCAGGACGGAGGTCCCAGCAGGCGTCTTATCCGCCACTGTCTCCCGAAGGCACAGGTCTTCCCCTCTCTTCCTGCACAG
Seq C2 exon
CCTCCGATCCGGCTCTGATGTCCAGGACTACGCCCTCACTGGGTATGTCTGGAGCGCTGTCACCCCGAGCCCGGAGCACCTCGGGGACGAGGTGAACCTGAAGGTGACCGTGCTGTGCGACAGCCTGCGGGAGCCGCTCACTTTTACCTGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.456 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079413=PI3K_rbd=PU(32.0=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCACACCGTCGCCAATG
R:
CAGGTAAAAGTGAGCGGCTCC
Band lengths:
238-836
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development