DreINT0114237 @ danRer10
Intron Retention
Gene
ENSDARG00000086927 | pik3c2b
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:ZFIN;Acc:ZDB-GENE-050309-145]
Coordinates
chr11:23441747-23443061:-
Coord C1 exon
chr11:23442961-23443061
Coord A exon
chr11:23441908-23442960
Coord C2 exon
chr11:23441747-23441907
Length
1053 bp
Sequences
Splice sites
5' ss Seq
TTTGTGAGT
5' ss Score
5.91
3' ss Seq
AAACTTCACTGTTTTATCAGGCT
3' ss Score
5.13
Exon sequences
Seq C1 exon
GTGTCTCTGGGGTCCAGGCCAAATGGCTTTGGTTATGAGCTCTTTCAGGTGTCTGAAGAAAGAGATGAAGAAGTTGCGGCCTTCTGTCATGTACTTGATTT
Seq A exon
GTGAGTTGCTTTGTTTTGATTTTCCTTCACAGTGTCTATTAGGGATGCAATGATTCTCTGTAAAAACCAAATTGTCTCGTTGTCCTCCCACGGTTCAGTGCGCCCTGTGATCCGCGGGTCAGAATGCATTATTAATATTGATTTGTTAATAAAAACAACTGAAATCAAGCAGTTCTGCCTACCTAGATCAGTGGTCACTAATAGGTGGATCGAGGTCCGTGTTTAGACCCAGAAGTATACAGACACCGACATACAGCAGGTCTGTTACTTCAGTCCCGCAACTGCTCTGTGTTCTTCCGCACCCGATCACTCCTGCTATACACTCTGTTTACCCGCTAAGAACTGCTAAGAACAGCTAAGAACAGTTTTCTTCTCGACTGACTGTTCCTGCTGAATTAAGAGTAAAGAGCTGAACGCTCTCTCTTTGCTTAAGTTTCATTCACTACTATTGTGCTTTTAAGTGAAACGGAGCTTTATGGAATCATAATGAAATCATAAATAAAAATGCGTTGTTGCCTTGGTAATGCAAGCATAATGCAAACAAAAGTAATCAATACTCTAATTGTGTTTATGATTATTATCTGCTTAATTAGTTAAGATGTTGAGTCAGGATGTTATATTGAAAGAGGGGAAATTTAAGCTTTTTCTCTTTATTTTCTTAAGCTATTTATTTGCACAATTTTCAAAATGCCCTATTTTAATTTAATTAATGCAAGAACATGCAAATCTACAGTCATTTGTGTAAAGCTTTTGGATTGTCAGGTGTTTGTTACCCAATAAATATGTTTATTGTTCTTTGAATTGTTCTGTAAGCATTTTTTTCTAAGTATAAATTATAGCACATACCGTACCGTACACAAACAGTCACCCTAAAACCGGCATGCATACTGAACCTTCAGTAGATTAAACTGTTGCACCCCTAGTGTCTATAGTATTCACTTTTAAAAATGCTAGAATGTAATAATGCAATAATGCAATTTTAATGTAACAATGAAGTTACTAATTATTAATGTTCATTCACTCATTTATTCATAAACTTCACTGTTTTATCAG
Seq C2 exon
GCTGCGTTCGGCTTACCCTTGCAACGACTACTCTAAAAATTCAGGCTTTGTTTGGAGCCCTTGTGTGGCGCAAGATGAACTGCAGCAGGGCCTGGGTGTCAGCATAAAGGTCACCGTTTACAGTGACCACTTCAGAGAACCACTCACCTTTTCGTGCGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086927:ENSDART00000124810:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.029 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079413=PI3K_rbd=PU(32.0=60.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGGGTCCAGGCCAAATGG
R:
GTCGCACGAAAAGGTGAGTGG
Band lengths:
254-1307
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]