GgaINT1021603 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1745436-1745836:-
Coord C1 exon
chr26:1745736-1745836
Coord A exon
chr26:1745591-1745735
Coord C2 exon
chr26:1745436-1745590
Length
145 bp
Sequences
Splice sites
5' ss Seq
TGTGTGAGT
5' ss Score
5.84
3' ss Seq
AGCCTGCCCCTTGCCTGCAGGCT
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTCCCCCCCAGGCCACGCTCCTTAGCCAATGGCTATGAGCTCTTTGAGGTGTCAGAGGAGAGGGACGAGGAGGTGGCTGCTTTCTGCCATATGCTGGATGT
Seq A exon
GTGAGTACCGTGGACTTGTATGAGCCATCCCTTGCTGCACCCCAAGCCCTTGCCTGGGGCTGCTGGGCTGTGTGAGATGTCCCCAAATGGAGGCATTTGCAGAGGGAAACATAAAGCCACCCCTCAGCCTGCCCCTTGCCTGCAG
Seq C2 exon
GCTGCGGTCCAGCTCCAGCCCCCAGGACTATTCCCTGACTGGCTTCGTGTGGAGCGCCGTCAACCTCAGCCCCGAGCACCTGGGACATGGCATCAGCCTGAAGGTGACAGTGCTGTGTGACAGCCTGCGGGAGCCCCTCACCTTCACCTGCGACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.088 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079413=PI3K_rbd=PU(32.0=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCACGCTCCTTAGCCAATGG
R:
AGTCGCAGGTGAAGGTGAGG
Band lengths:
244-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]