MmuINT0119724 @ mm9
Intron Retention
Gene
ENSMUSG00000026447 | Pik3c2b
Description
phosphoinositide-3-kinase, class 2, beta polypeptide [Source:MGI Symbol;Acc:MGI:2685045]
Coordinates
chr1:134966895-134967905:+
Coord C1 exon
chr1:134966895-134966995
Coord A exon
chr1:134966996-134967750
Coord C2 exon
chr1:134967751-134967905
Length
755 bp
Sequences
Splice sites
5' ss Seq
TATGTAAGA
5' ss Score
3.54
3' ss Seq
CCTCCTTTCTTCCTATACAGCCT
3' ss Score
10.36
Exon sequences
Seq C1 exon
GTGGGCTCTCGGCCCCACACTGTTGCCAATGGCCACGAATTGTTTGAGGTCTCAGAGGAGAGAGATGAGGAAGTTGCTGCGTTCTGCCACATGCTGGATAT
Seq A exon
GTAAGAACTGGAGGATGGGATGGGGGGGGGGGGAGGTTTCCTGTGTATGTGCGTGCGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTGGGAGGATTCCAGGTCTCTAGAGGAAGCTACCTATTCCTTTAAGAAGGACGAGGAGCTATAGTAAATAAAATTCCAGAGTGGGACCCTTGCAGGCTTTTCTCTTGCAGGCTTTTCAGGCCAGCCTGGTCTACATAGCAAGTTTCAGGCCTGCCAAGGCTACACAGTGATACTCTGTCTCAAACCAACCAACCAACCAACCAAACAAACAAACAAACAAACAACAAAAACATTCACATTTTTAGTAAAATTCACAAACCTTGATCAGTCTAAGTGTCCTCTCGCTTCAGACCCTGACCCTCAGCTGCCCTTAGGAGTAAACATACCACTCAGTGAAGGAAAAACTTCCCATGTATGGAAGAGGAAGGAAGTAGATTGCTAACTACTTATTGGTTAAATTCTTTTAAACTTAGTGTAGAAAACTCCTATTTGAGCTCTTGCTACTGTTACACTGTGGGGATTGGTTTGTGACTGTAGCAGAGATGACCAGAAAGACTACAGCCCCCAGGCTGCCAACCCACTGCCCCAGCCTAGCCCACAGGTCAGGGGGCTCAGCTGAGTTGGGACAGAAAAGTCAGTGGGATTTTGGGAGTGAGGGGCCCTGCCGACCTTCTGAAGACACAGCAAGAGTCCTTCCTCCTTTCTTCCTATACAG
Seq C2 exon
CCTTCGAACGGGCTCTGATATCCAGGACTATTCCCTAACTGGGTGTGTCTGGAGCACTGTCACCCCAAGTCCAGAACACCTTGGGGATGAGGTCAACCTGAAGGTGACAGTGTTGTGTGACAGTCTCCGGGAGCCACTCACCTTTACCTGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026447-Pik3c2b:NM_001099276:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.441 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0079413=PI3K_rbd=PU(32.0=62.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTCGGCCCCACACTGTT
R:
GCAGGTAAAGGTGAGTGGCTC
Band lengths:
247-1002
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: