GgaINT0141651 @ galGal3
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
NA
Coordinates
chr26:1595644-1598011:-
Coord C1 exon
chr26:1597891-1598011
Coord A exon
chr26:1595675-1597890
Coord C2 exon
chr26:1595644-1595674
Length
2216 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTTGTCTGTGTCCCCACAGCAA
3' ss Score
11.46
Exon sequences
Seq C1 exon
GCTCCTCCACTGTGGATCTGCTCATCTACCAGACCCTGTGCTACACGCACGACGAGCTGCACACCGTTGATGTTGAGGATTTTGTGCTCAAGCTGTGTGGCTTGGAGGAATTCTTGCAAAA
Seq A exon
GTGAGTGGTGGAGAGGGGGAAGCGAGCACCGTGCATCGCTTGTCGGCTCATGAGGATGGATGGATGGATGGATGGCCAGGGTCAGTCCCTGCCTCCTGAACCATGCGGTGCTCTTGCCAAAATCAGCCTGTTGGGAGCATCCTTCCCCAGGCAGGATATAAGTCAGCTGTGCCTCACGCGCCCGCAGCCTGGGGATGGGCCTGAAGACCCAGGAGCTGCCAAAAAAGCTTTTTGGGAGAGCATCAATAACGGCCTTGTCACTCCCAGAGCTTGTTTGTTAAATCACAGGATGAGGTGGAAAACACCACTTCCAAGTGAGGTGACAGAGACTTTGGGCTCCTCAGAAACATCCTGCACTGCAAAGCAGGGAGAAAGGGGACAGTTTTCCTTTTCTTGCTAAAGCCAGGACCGTGCAGAGCCCTTTGCACGCTCCCCCCAACTTGCTGCTCCCCCCAGCACTGCTTTTTGCTGCAGGAAAGCTGCAGTCCTGGGTCTGATGGTTGGGGAAAGCTCCATCCAGAGCGAGGTGCAGCGTGGAGGCAGCAGCAGCCATGCACTCGTGGGCACATGCAGTGCTTCCCAGGACTGCCTGCAGCAAATGAGCTCCAGCTCTTCTTGGAGAGCAGCCCCACAGCCTGGCCCTGCTGCTTCAAATCGTGGGAGCTTTGCCATGGCGGCCAGGAGCTGCACTTTTAGGCCCTAAGGGGGCAGCTGGGAATTGTTCAGCACAGGATAGCCTGCACAGCACTGGCACAGAGGCTGCAGAGCCCGGCACATGTATGTACGTATGTGCTTTTGTGCATGGGTGTGCATACACACATGTGTACGTGTGCATATATGTGCATGGCTGCAGCAGAGTTGCTTGCACACAGCAGTTGCATTGCCCCTCAGTACCCACAGCGTTTCAGTTGTTGGGTTTTTCCCTCCTGTAAATGCTGTCGTTGTCAGCAAGATGTTCTCTGTTTTCTCTAATGAGGCTTAACTAGAAGCAGCCGCTGCTGGAAAAATGGGATTTGCACCAAACAAAAGGACGGTGCTTTGCCATCCTTTTACAGCCTGCACTTAAAGAGGAAGGCAGGGCTTTTAGGATGGATGCTGCTCAGGCAGACAGGTGGGGCTGTGGGTCCATCTTGGGCTCTGCTGGAGGATTCTTGGGTGATTTAAAGCGAATCCCCTCATTTCTACCTAACTTCTCCCTTAGGAAAGTGGTCGCAGTTGTGTTGGCCTCCCTGGTATCCCAGCTGGAGGCATCCTGGGCTGGGAGCAGTACAGCCCGTCCCCAGCGAGCAGCTCCTGTATCTCCCACAGCCCTCAAAGGACCTTTGAGAAAGCCCTGGGAAATAAAGCCCTTTTGTTGTTGGCCTTTTCTTTCCACATCTTCCCAAAGCAGAGGAGATGCTGGAAGTGCCAAAACCCTCCACGCAGAGCCAGTTGGGCACTCAAGCTCTCCAAATCAGCCCGAGCTGCTGCTGGTGCTTTCTGCCAGCTTGCATTTGCAAGGTGCAGGGGAAAGGCGGGGCTGGGCTGAGCATCCCAGGGGATGTTTGCATCCCGAGGTGGGGTGCTCAGGATGCTGGCCCTATGTGATAAGGGCACGTTGCTGCCCGAGCCAGGCTTCCTGCAGTGCCTCCTCCCCATCCTGCAGCAGGGCAGGGCCCGGTGCTGATGGCCACGCAGTGTTTGGGGCTCCGTGTCCCCATTCCCTGCAACCCTCCCCCCTCACATCCTGCCATTGCAACTCCATCCTGCCATTGAGCCTGCAGATGTGCTGCCCGCCCTGCGGCACTGTGCCCAGAGGTGACAGCAAGGGCTGAATTGGTTCTTTCTACTCTGAAGCTGGCAAAGAAAGCAGGACTGTATGGCAAGCTCCACGGACCCTAATGTGGGCCATTCCCATTCTGCAGAAGCCCACGGTGCCAGGCTTTCAGCCAGCCTCCTCCATGCCTGCTCCCAGCAGGGCTGGCCACAGCTTTATGGAGGGCACAGAGGAAGGAGGAAAAACAATAGTATATTCTTAGGGCTTTCCTAGCACAGCAACCCAGTGAAATGTTTTGCGGGCAAGGGAAGCACAGCCAAACCCTGGCCGTGCTCAGCCACAGGGTGTTAGCATAGGGTTGGAGTTGGGGGATCTTCCCCCAGCCTGTTCCTAGTGGGTGGAGAGGGGCCGTGCAATGGAGAGGGGCCGTGCAATGAGGCTGTTGTCTGTGTCCCCACAG
Seq C2 exon
CAAGCACGCTCTGGGGAGCCATGAGTACATC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(41.7=100)
A:
NA
C2:
PF0079413=PI3K_rbd=FE(10.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]