BtaINT0111695 @ bosTau6
Intron Retention
Gene
ENSBTAG00000024633 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr16:2021298-2024960:-
Coord C1 exon
chr16:2024840-2024960
Coord A exon
chr16:2021410-2024839
Coord C2 exon
chr16:2021298-2021409
Length
3430 bp
Sequences
Splice sites
5' ss Seq
GAAGTGAGT
5' ss Score
7.97
3' ss Seq
TTGTCCCTCTGTCCCTCCAGCAA
3' ss Score
10.28
Exon sequences
Seq C1 exon
GCTCCTCCACTGTAGACTTGCTCATCTACCAGACCCTGTGCTACACCCGTGATGAACTGAGGGATGTCGACGTGGGTGACTTTGTGCTGAAGCCCTGTGGGCTGGAGGAGTTCCTGCAGAA
Seq A exon
GTGAGTGAGCGGGTGGGGACAAGCGGGCAGGAGGTGGCACGTGTCTTCTGGGACGCAGGGTCATGAGAGGGCTTTGCAGGGGCACGCTGGGCTCGAGGCCTGGCCACAGGCAGGACTCCTGCTTTCTGGGCATACTCTCAGCCACGTCGCGCTTTCCCCAGGAGCTCGGTCTTCCAGAGGGCTTGGCCGGCTTCCTGAGACAAATCTGCTGTGGAAAGAGCTTGGAACTGGGATTGGGCAAAGAGCATATCTGCCTGCAGACTTGTGCACGTGGAGAGATGTGTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTGTAGCCTGCCAGGCTCCTCTGTCCATGGGATTTTCCAGGCGAGAATACTAGAGTGGGTTACCATTCCCTTCTCCAGGGGAATCTTCCCTACCCAGGAATCGAACCTGGGTCTCCTGTACTGCAGGCAGATTCAATACCAACTAAGCCACCAGAGAAGCCTAACTTTGGCATATAGGACAGATCAGAAGCCAGCGTAAGCACAGGTGGTCTTAAGTCCCCCCACACTGTGGTCTTAAGTCACACACTCCTCACTATTACCATCTGGGGTGCCAAGGCCAACCAAGCAAACCCACCAAGATTCCGGGTGGAATTATCCCCAACCAAACTCCTGCTTCTCACCTCCCTCTGTGGGTCGTGTGACTGTGAATAACAATATAATCTCTACAGACGACCTGCATGCCATTACCCCTGCTCAGAGGACAACACACAAGACCTCTGTGCCCCTAACCCAGCCTAGGCTCCAGAGAAGGCGCTCTAGGGGGTCCCCAGCTGCTCCAGCCCCAAGTTGAACTGTGGTCAGAAAGGAAGCCCGGGAGAAGGGCAGACTGAGTCCCCCCTGCAGGCCAGCTCAGCAGGCCTGGGCCAGGTCCCAGCAGCTGGGGAACAGAAGCCGGAAAGGGACTTCCTTCCTCAGCAGAGCCGGGAGTCTAGGCCAGAAACAGCAAGGAGAGCAATGCAGAGGGCTCTGTGCAGAAGCCGACAAAGGGGCCCAGGCCCGCAGCCAGGACAGGCCGCTAGGACGTAAGTGGGTTGTCCACATCCAGAGGGGCCAAGCCTCAGAATTGGGCCCCCCCTGCTGAGACTGGGTGGCAGCCGAAACCTGGAGGTGGGAGAGGCTGGGCCATGGGGCAGGGCTGGCGGGAGTGCCTGGGAGGAAGGAAGAGGTGGCGGAGGTGGGGGAGGCGGCAGGAAACCCAGCCTTCCCCTGGGACCATCTCAAGGTTCTTATCAGGGCAGCCTGCATCCTGGACTGCCACTCCCCCTCAGCGTCAGCCCCTCTGCTAGACAGGGGAGGAAACCCAGGGTCTCCTGGGAGCCAGCAGCTTTCTGGAGCTCCCAGGGGGCCTTCCCACCTCCACTCAAGGCAGATGCTCAGGGGCCTGGGCTTTTCTGTTACACGAGAGGAAAGAGAAGAGCCCTGGTGGAGGAGGGGCTCCTGGACCAAGAGCGATGGACACAAGTCCCCGGGGAGCGTGCCTGACTTTCTCTGTGGAAGGCTTTCTTCTGCGTGCATTCAAGGTAGGGGGAGACAGGCCTGACCCTAGGACCAACCATCCTGTTCCACCTCGCCTGCGACATTCTCCCTGCGTCTTGGCAAGAAGTCAGCACCTGACCGCTTATCCACCACCTCTGGACTCAGGGGCTGAAGGACTAGGGGCCGTAAAGGAAATGGCAGTATCCAGCTGACCTGGATCCTCTCTTTGGACTGGTCCTTCTCTGGGAACGTTTAGGGATTGCTCATCGGGGTGTTCTCATCTATAACCCTTGGCACATTTTACAGAAGCAGCTGAGGGCCAGAGTCTCACAACCCGTAAAAGGCAGCCAGACCCCAACCCGCTGTGCTCAGGTGCCCACAGTGCCCACTGCTCCTTCCGACAGTGGCAGGGGCTCTCTGCCAGGAGCCCCTGAGTCTGGGGCCCCTTTTATTCTTCTGGGGGAAAGTAAGTATACATTGAACTTCCCTGGAGTTGTGCCACGCAGGGCCCTGCCCTCTTCTTTTCTCTGTTTTCCTGTTGAGGGCACAGAGACAGGAAGGCCCCACAATACCCCTGAGAAGCCAGCCAAGAATGGCGCTAGTCACAGATCAGGCATCCTTGCCTCTCGACCTACATGGAAGGGAAGGAGCAAGTGGCGGTGTTCCCCGCGTGCCCCTCAGCCCCTCAGCCCAGAGAGGCAGCCTCTTCTCCCCGTTCCCAGCATCGGCTGCACCAGGCAGCCAGGGACGAGGGCAGCATGCGGCTAAAGCTTGAGGGGGAGGGCAGATCTCTCTGTTTCCTGATCCGCTGACCTCTGGCTGATTCTGCAGCCCGCCACACAGCCGTGCCACCCGAGGGGTGCAGCCCCCTCTCTGCCAGCCCAGCCCCCCAGAGCCCAGCACAGTGGAAAGAAGACTGGTCCCCATCAGACTTTCCAGTGAGGCTGTTCACTGCAGAGGGCGCTGAACGGACAGGCGCTGGAGGCGCGCCTCTGGTGGGGAGGACAGCCAGCCCCACATGCCAGCGGGGCAAGGGCTCGCCGGCAGAGGAAGGGGGAAGAGAGCAACTGTGGTTCTTACCCCTGGTCCCGTGGGGCACTCTGCCCAGTCCTCCTCCTGCCCCCGGCCGTAAAGACAGCGCACAAGATCCTAGGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACCCCATGGACTGTAGCCTACCAGGTTCCTCTGTCCGTGGGATTCTCCAGGCAAGAGTACTGGAGTGGGTTGCCATTTCCTTCTCCAGGGGATCTTCCCGACTCAGGGATTGAACCCAGGTCTCCCGAAATCTAGGCAGACGCTTTATCGTATGAGCCGCCAGGGAGGATGGAGTTTAAACACTACCCCTGAGAAATCTCTGTTCCCCCCCTCTCCAGAAGTTCCCACTCCTGGAGTTGAACCAGGGATAACGGTAATAAATACCTAGCACAGTTAGTGTTTGTACAGACCAAGGGTTAACTGTATTAGGCGGCTTTTCTTTAGACACACCTCTGTTTCTTTGCCTGAGCTCTACTGTGACGTTTCCCAGCAGCCAAGGTAGAGGGTACAGCACAGGAATACAGCCCCTCTCCTGCCTCCCCTTCCTCTTGTTTCTTTTGCCCCTAGGCTGAGGTGTGCATTTCCCTCGAAAGTTCCACTGAGTCTCTAGGATGCTAACGGCCTTGTCCCTCTGTCCCTCCAG
Seq C2 exon
CAAGCACGCCCTGGGCAGCCACGAGTATATTCAGTACTGTCGGAAGTTCGGCATCGATATCCGGCTGCAGCTGATGGAGCAGAAGGCCGTGCGCGGTGACCTGGCCCGCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024633:ENSBTAT00000017388:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(38.8=100)
A:
NA
C2:
PF0079413=PI3K_rbd=PD(28.2=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development