GgaINT1021606 @ galGal4
Intron Retention
Gene
ENSGALG00000000623 | PIK3C2B
Description
phosphatidylinositol-4-phosphate 3-kinase, catalytic subunit type 2 beta [Source:HGNC Symbol;Acc:HGNC:8972]
Coordinates
chr26:1742871-1745319:-
Coord C1 exon
chr26:1745199-1745319
Coord A exon
chr26:1742983-1745198
Coord C2 exon
chr26:1742871-1742982
Length
2216 bp
Sequences
Splice sites
5' ss Seq
AAAGTGAGT
5' ss Score
8.4
3' ss Seq
TGTTGTCTGTGTCCCCACAGCAA
3' ss Score
11.46
Exon sequences
Seq C1 exon
GCTCCTCCACTGTGGATCTGCTCATCTACCAGACCCTGTGCTACACGCACGACGAGCTGCACACCGTTGATGTTGAGGATTTTGTGCTCAAGCTGTGTGGCTTGGAGGAATTCTTGCAAAA
Seq A exon
GTGAGTGGTGGAGAGGGGGAAGCGAGCACCGTGCATCGCTTGTCGGCTCATGAGGATGGATGGATGGATGGATGGCCAGGGTCAGTCCCTGCCTCCTGAACCATGCGGTGCTCTTGCCAAAATCAGCCTGTTGGGAGCATCCTTCCCCAGGCAGGATATAAGTCAGCTGTGCCTCACGCGCCCGCAGCCTGGGGATGGGCCTGAAGACCCAGGAGCTGCCAAAAAAGCTTTTTGGGAGAGCATCAATAACGGCCTTGTCACTCCCAGAGCTTGTTTGTTAAATCACAGGATGAGGTGGAAAACACCACTTCCAAGTGAGGTGACAGAGACTTTGGGCTCCTCAGAAACATCCTGCACTGCAAAGCAGGGAGAAAGGGGACAGTTTTCCTTTTCTTGCTAAAGCCAGGACCGTGCAGAGCCCTTTGCACGCTCCCCCCAACTTGCTGCTCCCCCCAGCACTGCTTTTTGCTGCAGGAAAGCTGCAGTCCTGGGTCTGATGGTTGGGGAAAGCTCCATCCAGAGCGAGGTGCAGCGTGGAGGCAGCAGCAGCCATGCACTCGTGGGCACATGCAGTGCTTCCCAGGACTGCCTGCAGCAAATGAGCTCCAGCTCTTCTTGGAGAGCAGCCCCACAGCCTGGCCCTGCTGCTTCAAATCGTGGGAGCTTTGCCATGGCGGCCAGGAGCTGCACTTTTAGGCCCTAAGGGGGCAGCTGGGAATTGTTCAGCACAGGATAGCCTGCACAGCACTGGCACAGAGGCTGCAGAGCCCGGCACATGTATGTACGTATGTGCTTTTGTGCATGGGTGTGCATACACACATGTGTACGTGTGCATATATGTGCATGGCTGCAGCAGAGTTGCTTGCACACAGCAGTTGCATTGCCCCTCAGTACCCACAGCGTTTCAGTTGTTGGGTTTTTCCCTCCTGTAAATGCTGTCGTTGTCAGCAAGATGTTCTCTGTTTTCTCTAATGAGGCTTAACTAGAAGCAGCCGCTGCTGGAAAAATGGGATTTGCACCAAACAAAAGGACGGTGCTTTGCCATCCTTTTACAGCCTGCACTTAAAGAGGAAGGCAGGGCTTTTAGGATGGATGCTGCTCAGGCAGACAGGTGGGGCTGTGGGTCCATCTTGGGCTCTGCTGGAGGATTCTTGGGTGATTTAAAGCGAATCCCCTCATTTCTACCTAACTTCTCCCTTAGGAAAGTGGTCGCAGTTGTGTTGGCCTCCCTGGTATCCCAGCTGGAGGCATCCTGGGCTGGGAGCAGTACAGCCCGTCCCCAGCGAGCAGCTCCTGTATCTCCCACAGCCCTCAAAGGACCTTTGAGAAAGCCCTGGGAAATAAAGCCCTTTTGTTGTTGGCCTTTTCTTTCCACATCTTCCCAAAGCAGAGGAGATGCTGGAAGTGCCAAAACCCTCCACGCAGAGCCAGTTGGGCACTCAAGCTCTCCAAATCAGCCCGAGCTGCTGCTGGTGCTTTCTGCCAGCTTGCATTTGCAAGGTGCAGGGGAAAGGCGGGGCTGGGCTGAGCATCCCAGGGGATGTTTGCATCCCGAGGTGGGGTGCTCAGGATGCTGGCCCTATGTGATAAGGGCACGTTGCTGCCCGAGCCAGGCTTCCTGCAGTGCCTCCTCCCCATCCTGCAGCAGGGCAGGGCCCGGTGCTGATGGCCACGCAGTGTTTGGGGCTCCGTGTCCCCATTCCCTGCAACCCTCCCCCCTCACATCCTGCCATTGCAACTCCATCCTGCCATTGAGCCTGCAGATGTGCTGCCCGCCCTGCGGCACTGTGCCCAGAGGTGACAGCAAGGGCTGAATTGGTTCTTTCTACTCTGAAGCTGGCAAAGAAAGCAGGACTGTATGGCAAGCTCCACGGACCCTAATGTGGGCCATTCCCATTCTGCAGAAGCCCACGGTGCCAGGCTTTCAGCCAGCCTCCTCCATGCCTGCTCCCAGCAGGGCTGGCCACAGCTTTATGGAGGGCACAGAGGAAGGAGGAAAAACAATAGTATATTCTTAGGGCTTTCCTAGCACAGCAACCCAGTGAAATGTTTTGCGGGCAAGGGAAGCACAGCCAAACCCTGGCCGTGCTCAGCCACAGGGTGTTAGCATAGGGTTGGAGTTGGGGGATCTTCCCCCAGCCTGTTCCTAGTGGGTGGAGAGGGGCCGTGCAATGGAGAGGGGCCGTGCAATGAGGCTGTTGTCTGTGTCCCCACAG
Seq C2 exon
CAAGCACGCTCTGGGGAGCCATGAGTACATCCAGCACTGCAGGAAATTTGACATCGACATCCGCCTGCAGCTGATGAGGAGGAAGGCGGTGCGCAGCGACCTGGCCAGGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000623:ENSGALT00000000884:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.053
Domain overlap (PFAM):
C1:
PF0079413=PI3K_rbd=FE(38.8=100)
A:
NA
C2:
PF0079413=PI3K_rbd=PD(28.2=76.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]